Scaffold Ga0335079

Basic Information
Taxon OID	3300032783 Open in IMG/M
Scaffold ID	Ga0335079_10002341 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032783 Open in IMG/M

Scaffold ID

Ga0335079_10002341 Open in IMG/M

Source Dataset Name

Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	21895
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (70.97%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

21895

Total Scaffold Genes

31 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (70.97%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5065	Long. (^o)	-80.2537	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Florida

Coordinates

Lat. (^o)

26.5065

Long. (^o)

-80.2537

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000188	Metagenome / Metatranscriptome	1692	Y
F000536	Metagenome / Metatranscriptome	1044	Y
F000781	Metagenome / Metatranscriptome	895	Y
F002750	Metagenome / Metatranscriptome	533	Y
F054194	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335079_1000234111	F000188	GAGG	MGVKAELAFDVCWDVYRSAREVLETKRGLAALNQKDVGKFLWRPDIRPRLSEWVADFALAGQKALDAPDWASRMVLFRLYYLGLAPYENARHFLGLSENSWVQWTEEIRKRCGKELLQRGMFPPRRYFRNAS
Ga0335079_1000234118	F054194	AGGGGG	MPARGNRQKISTTIAPENGAFLKSLIRRGKASSMAEAVDRAVAIARRAENRRQLEEATVAYYASLEGEALREEQALERAVGHATSRVNYDGE
Ga0335079_1000234119	F002750	GGA	LLRGRYVRLLEGEVVRLRAENRALMNSLLGTAGFPPVEFPEAPKPQPLPRLRKRSWHQLQAWREKASTPTAALDRDATAHKQGIA
Ga0335079_1000234124	F000781	AGGA	MLTVTQLAPIKDRDPYLYETLTKIVSSVNATSQRAGVDPATPASAPTAVASINVQASNGWFDISITDPSDSRPGLFYFAESDTTPAFNSPRVYFLGASRNLYLQLGNQTLYWRAYSQYIGSLPSAPITFGSPPAAVVGGGPSGPTPQPSTGSGVLPNGQVRGGNGFGINPGSRIVRQPVL
Ga0335079_100023414	F000536	N/A	MVELTPQQMGILERLFEAGFRPIAIPPYESALCVRRGECAAVLSPAANGGLKLLAPPSYLVGGNFGVRLKRGGGEVFVWKKTELPATPERLQELETFRAELARILDLAP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335079_10002341

Overview

Ecosystem & Geography

Associated Families

Sequences