Scaffold Ga0335079

Basic Information
Taxon OID	3300032783 Open in IMG/M
Scaffold ID	Ga0335079_10000010 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032783 Open in IMG/M

Scaffold ID

Ga0335079_10000010 Open in IMG/M

Source Dataset Name

Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	295960
Total Scaffold Genes	270 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	174 (64.44%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

295960

Total Scaffold Genes

270 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

174 (64.44%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5065	Long. (^o)	-80.2537	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Florida

Coordinates

Lat. (^o)

26.5065

Long. (^o)

-80.2537

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000138	Metagenome / Metatranscriptome	1954	Y
F000348	Metagenome / Metatranscriptome	1250	Y
F001329	Metagenome / Metatranscriptome	721	Y
F008829	Metagenome / Metatranscriptome	327	Y
F011872	Metagenome / Metatranscriptome	286	Y
F040248	Metagenome / Metatranscriptome	162	Y
F092524	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335079_10000010158	F008829	GGA	MGRLISVIFAALLASSALAQVKQIKHERRPPALPDSAAATTTEPKQPAYDYFSILDGMPMLLELHHDTEVGTNKPIDVYMFVIELQVMNSDGNLEPEGLQIHNYYTAKAVNPNTAPNPNNARDCKSWNGLVTNEMKNRNSSSPTWSYVEFTVAQGARTIQTNEDGQVFWSDDIQCWGSRDRFPPF
Ga0335079_1000001024	F000138	GGAG	MHMQMVNSFRIPFTTLISYIPVIATVVTTLFSVILARATLRYVEATDKGLALAREEFEREWSPDLHIKIERVSATEARVIVTNLAKTSVLLQLLQLRKLSHAMPFERCRLNDPLVGGLTWNQEMGKRILACTGSDFEGPIAAAMTFYAAGRMFRTDWFRSQIQVRDGRIVSLEPSNMPTRRVRQVERKGPERRRREFVQDVTAPIEPESVNTQPDESFFVTGA
Ga0335079_10000010261	F092524	N/A	MVTTDPAIWVGLACLKANPKVKNFRRFGDGKGAYVNIAAWAPSRAAFEKKVKRHVEGIDCILVELENVQLLEQRMGEADFPEELITMRQTAIRQPDDSVFGTFHIWRQDDSN
Ga0335079_10000010267	F000348	N/A	VGVLLLSLAVLAASDWRSVGQTDAGDKVSISSVKVLKSNQRLALVRVEYKEPAQLPQGGPFVEMRARVRFNCSNGVATPTSEWFYSRDHSGRFVVSKKAARDDEFGKAPEHGFADLVSKSVCTQAK
Ga0335079_1000001029	F001329	GGAG	MAKNHYVTKPKRRNKNSNRKDPSHATMAALRERAAAEAKKSGK
Ga0335079_100000105	F011872	AGG	MATESGTRKDSMKVEKLSLLVLTLCIVVLVYLLIQRPF
Ga0335079_1000001074	F040248	N/A	MDMNNSSPDTPRTSAGAKKPYEKPSFRFEQVFVTTALACGKTDPLQSSCHSNLQSS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335079_10000010

Overview

Ecosystem & Geography

Associated Families

Sequences