Scaffold Ga0335085_10051798

Overview

Basic Information

• Taxon OID: 3300032770
• Scaffold ID: Ga0335085_10051798
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5545
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. FDAARGOS 1241 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5052
  • Long. (^o): -80.2345

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001054	Metagenome / Metatranscriptome	792	Y
F031345	Metagenome / Metatranscriptome	182	Y
F083311	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_100517982	F001054	GGAGG	MNRIRIGRPRARPLSPDPPDPHIGRPTGARADRAFRAGARDLMAWAGRRLWLAAWTVIRAVTMAHHEQVRMWECILLTSGAAPLTAAGPLRWVRSLDGDRLAGSHLPAQDRAGTGR
Ga0335085_100517983	F083311	AGGAG	MDSFLMFLNCPAYMDKDGASRCGLPAEVHCRYTMNSTDGPLESAKISCPRGHHFNGPIDCLTVPEQSAATAESASPPPAGQGTEPRAWWAGERP
Ga0335085_100517986	F031345	GGAGG	MTTAVPSAALATIQPVFTNVERLALAGFLAGYRCLTREAY