Scaffold Ga0335085_10001384

Overview

Basic Information

• Taxon OID: 3300032770
• Scaffold ID: Ga0335085_10001384
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 52433
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (58.73%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5052
  • Long. (^o): -80.2345

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000580	Metagenome / Metatranscriptome	1010	Y
F000925	Metagenome / Metatranscriptome	832	Y
F001262	Metagenome / Metatranscriptome	735	Y
F006140	Metagenome / Metatranscriptome	380	Y
F103038	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_1000138419	F006140	N/A	MLRDLYSNLTAREQRALRWSAAATAVALWLSVAWADLWLLLAVPLFAAAFLVYRARHQDEPDEDDLDLL
Ga0335085_1000138438	F103038	AGGAG	MSQATGPREGEGVAEQRAQQELTNRVGATLTRRSKPSDTRWRTWRHRLGIGGRAEA
Ga0335085_1000138439	F000580	N/A	MSAEEDTVLIASQLADLTARVEDLAQQLKGFRKRADDAQERADTQQERIDLAARELTEVSDRLQAAANALRETV
Ga0335085_1000138441	F001262	AGGAG	MALSDEVDEIFRREVKTLPAYAKAQAAAGSGIAPPVDEMNALLMGLVVASQRAFHLLARRLEGMDGA
Ga0335085_1000138444	F000925	GGAG	MASSNPERKNYAEIERLEKLLAELRSSPSTARETEAIREIGLELALAIREVGAMLVNVAWEQSFAKSGRGRED