Metagenome / Metatranscriptome Family F103038

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103038
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	55 residues
Representative Sequence	MSQATEPREDPGVAEDRAQRELTSRVGATLTRQSKPSNGKWSTWRGRLGIRGKAEA
Number of Associated Samples	84
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	78.22 %
% of genes near scaffold ends (potentially truncated)	30.69 %
% of genes from short scaffolds (< 2000 bps)	85.15 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (72.277 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (30.693 % of family members)
Environment Ontology (ENVO)	Unclassified (33.663 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.495 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 39.29% β-sheet: 0.00% Coil/Unstructured: 60.71%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.28
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.28
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF01544	CorA	24.75
PF06305	LapA_dom	7.92
PF03706	LPG_synthase_TM	3.96
PF00166	Cpn10	3.96
PF07228	SpoIIE	1.98
PF00248	Aldo_ket_red	0.99
PF00118	Cpn60_TCP1	0.99
PF05988	DUF899	0.99
PF01381	HTH_3	0.99
PF00795	CN_hydrolase	0.99
PF05524	PEP-utilisers_N	0.99
PF04828	GFA	0.99
PF00903	Glyoxalase	0.99
PF04542	Sigma70_r2	0.99
PF00877	NLPC_P60	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0598	Mg2+ and Co2+ transporter CorA	Inorganic ion transport and metabolism [P]	24.75
COG3771	Lipopolysaccharide assembly protein YciS/LapA, DUF1049 family	Cell wall/membrane/envelope biogenesis [M]	7.92
COG0234	Co-chaperonin GroES (HSP10)	Posttranslational modification, protein turnover, chaperones [O]	3.96
COG0392	Predicted membrane flippase AglD2/YbhN, UPF0104 family	Cell wall/membrane/envelope biogenesis [M]	3.96
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	0.99
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.99
COG0791	Cell wall-associated hydrolase, NlpC_P60 family	Cell wall/membrane/envelope biogenesis [M]	0.99
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.99
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.99
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.99
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	0.99
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	72.28 %
Unclassified	root	N/A	27.72 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	72.28 %
Unclassified	root	N/A	27.72 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	72.28 %
Unclassified	root	N/A	27.72 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	64.36 %
Unclassified	root	N/A	27.72 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.96 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	64.36 %
Unclassified	root	N/A	27.72 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3.96 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	49.50 %
Unclassified	root	N/A	27.72 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	3.96 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	2.97 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	34.65 %
Unclassified	root	N/A	27.72 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	10.89 %
Betaproteobacteria bacterium 13_1_20CM_3_63_8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium 13_1_20CM_3_63_8	3.96 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2.97 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	0.99 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	34.65 %
Unclassified	root	N/A	27.72 %
Kribbellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae	10.89 %
Betaproteobacteria bacterium 13_1_20CM_3_63_8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium 13_1_20CM_3_63_8	3.96 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2.97 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.99 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	34.65 %
Unclassified	root	N/A	27.72 %
Kribbella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella	10.89 %
Betaproteobacteria bacterium 13_1_20CM_3_63_8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium 13_1_20CM_3_63_8	3.96 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2.97 %
Blastococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus	0.99 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	34.65 %
Unclassified	root	N/A	27.72 %
Kribbella capetownensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → Kribbella capetownensis	10.89 %
Betaproteobacteria bacterium 13_1_20CM_3_63_8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium 13_1_20CM_3_63_8	3.96 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2.97 %
unclassified Blastococcus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus → unclassified Blastococcus	0.99 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	34.65 %
Unclassified	root	N/A	27.72 %
Kribbella capetownensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → Kribbella capetownensis	10.89 %
Betaproteobacteria bacterium 13_1_20CM_3_63_8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium 13_1_20CM_3_63_8	3.96 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2.97 %
Blastococcus sp. PRF04-17	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus → unclassified Blastococcus → Blastococcus sp. PRF04-17	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908016\|OU_2_1_1_newblercontig43849	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	524	Open in IMG/M
3300000956\|JGI10216J12902_123588672	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	896	Open in IMG/M
3300004479\|Ga0062595_100129186	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1420	Open in IMG/M
3300004479\|Ga0062595_100583383	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	866	Open in IMG/M
3300005172\|Ga0066683_10056406	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2328	Open in IMG/M
3300005179\|Ga0066684_10550044	Not Available	774	Open in IMG/M
3300005181\|Ga0066678_10915229	Not Available	573	Open in IMG/M
3300005336\|Ga0070680_101160535	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	668	Open in IMG/M
3300005339\|Ga0070660_100325070	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1264	Open in IMG/M
3300005406\|Ga0070703_10047878	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1356	Open in IMG/M
3300005530\|Ga0070679_100394539	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1330	Open in IMG/M
3300005540\|Ga0066697_10011803	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	4533	Open in IMG/M
3300005545\|Ga0070695_100690711	Not Available	809	Open in IMG/M
3300005553\|Ga0066695_10066174	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2177	Open in IMG/M
3300005558\|Ga0066698_10459521	Not Available	868	Open in IMG/M
3300005558\|Ga0066698_10535398	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	796	Open in IMG/M
3300005614\|Ga0068856_101026374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	843	Open in IMG/M
3300006034\|Ga0066656_10237452	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1169	Open in IMG/M
3300006046\|Ga0066652_100431776	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1208	Open in IMG/M
3300006046\|Ga0066652_101158685	Not Available	732	Open in IMG/M
3300006755\|Ga0079222_10179136	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → Kribbella capetownensis	1246	Open in IMG/M
3300006806\|Ga0079220_10262907	Not Available	1041	Open in IMG/M
3300006806\|Ga0079220_10841298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	701	Open in IMG/M
3300009137\|Ga0066709_101172354	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1131	Open in IMG/M
3300009137\|Ga0066709_104174966	Not Available	526	Open in IMG/M
3300009162\|Ga0075423_12501956	Not Available	563	Open in IMG/M
3300010323\|Ga0134086_10356144	Not Available	580	Open in IMG/M
3300010335\|Ga0134063_10095818	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1343	Open in IMG/M
3300010396\|Ga0134126_10620520	All Organisms → cellular organisms → Bacteria	1235	Open in IMG/M
3300010396\|Ga0134126_12607477	Not Available	549	Open in IMG/M
3300012198\|Ga0137364_10291236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1211	Open in IMG/M
3300012198\|Ga0137364_10784791	Not Available	719	Open in IMG/M
3300012200\|Ga0137382_10076740	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2156	Open in IMG/M
3300012204\|Ga0137374_10309183	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus → unclassified Blastococcus → Blastococcus sp. PRF04-17	1293	Open in IMG/M
3300012208\|Ga0137376_10429151	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1148	Open in IMG/M
3300012350\|Ga0137372_10006177	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	11633	Open in IMG/M
3300012350\|Ga0137372_10450961	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	965	Open in IMG/M
3300012353\|Ga0137367_10554157	Not Available	807	Open in IMG/M
3300012354\|Ga0137366_10003023	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	13028	Open in IMG/M
3300012354\|Ga0137366_10170604	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → Kribbella capetownensis	1634	Open in IMG/M
3300012532\|Ga0137373_10901841	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	648	Open in IMG/M
3300012972\|Ga0134077_10522737	Not Available	528	Open in IMG/M
3300012977\|Ga0134087_10137634	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1052	Open in IMG/M
3300012985\|Ga0164308_10258393	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1362	Open in IMG/M
3300014150\|Ga0134081_10286139	Not Available	587	Open in IMG/M
3300014157\|Ga0134078_10055270	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1385	Open in IMG/M
3300014497\|Ga0182008_10030879	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2698	Open in IMG/M
3300015265\|Ga0182005_1166044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	649	Open in IMG/M
3300017654\|Ga0134069_1091236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → Kribbella capetownensis	988	Open in IMG/M
3300018061\|Ga0184619_10268871	Not Available	783	Open in IMG/M
3300018061\|Ga0184619_10439344	Not Available	584	Open in IMG/M
3300018431\|Ga0066655_10665591	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	704	Open in IMG/M
3300018433\|Ga0066667_10245065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1353	Open in IMG/M
3300019279\|Ga0184642_1680348	Not Available	757	Open in IMG/M
3300019890\|Ga0193728_1073871	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → Kribbella capetownensis	1616	Open in IMG/M
3300021344\|Ga0193719_10062989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium 13_1_20CM_3_63_8	1610	Open in IMG/M
3300021415\|Ga0193694_1006429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium 13_1_20CM_3_63_8	1566	Open in IMG/M
3300021445\|Ga0182009_10640264	Not Available	572	Open in IMG/M
3300024245\|Ga0247677_1036339	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	712	Open in IMG/M
3300025910\|Ga0207684_10074591	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → Kribbella capetownensis	2882	Open in IMG/M
3300025910\|Ga0207684_10310962	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1358	Open in IMG/M
3300025913\|Ga0207695_11308409	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	605	Open in IMG/M
3300026023\|Ga0207677_10198556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium 13_1_20CM_3_63_8	1592	Open in IMG/M
3300026078\|Ga0207702_11535525	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	659	Open in IMG/M
3300026295\|Ga0209234_1025793	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → Kribbella capetownensis	2231	Open in IMG/M
3300026310\|Ga0209239_1019059	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → Kribbella capetownensis	3439	Open in IMG/M
3300026327\|Ga0209266_1201099	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	723	Open in IMG/M
3300026342\|Ga0209057_1037825	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → Kribbella capetownensis	2434	Open in IMG/M
3300026523\|Ga0209808_1074773	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → Kribbella capetownensis	1473	Open in IMG/M
3300026547\|Ga0209156_10151042	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1126	Open in IMG/M
3300026547\|Ga0209156_10378732	Not Available	598	Open in IMG/M
3300027787\|Ga0209074_10180115	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	781	Open in IMG/M
3300028705\|Ga0307276_10195323	Not Available	531	Open in IMG/M
3300028711\|Ga0307293_10074791	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1067	Open in IMG/M
3300028717\|Ga0307298_10197180	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	592	Open in IMG/M
3300028722\|Ga0307319_10000378	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	13669	Open in IMG/M
3300028771\|Ga0307320_10011793	All Organisms → cellular organisms → Bacteria	3127	Open in IMG/M
3300028814\|Ga0307302_10191893	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	996	Open in IMG/M
3300028880\|Ga0307300_10096359	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	889	Open in IMG/M
3300028881\|Ga0307277_10006544	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4488	Open in IMG/M
3300028881\|Ga0307277_10058654	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → Kribbella capetownensis	1579	Open in IMG/M
3300028881\|Ga0307277_10100135	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → Kribbella capetownensis	1229	Open in IMG/M
3300028881\|Ga0307277_10498112	Not Available	546	Open in IMG/M
3300028884\|Ga0307308_10569887	Not Available	543	Open in IMG/M
3300030831\|Ga0308152_110302	Not Available	578	Open in IMG/M
3300030987\|Ga0308155_1005528	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	907	Open in IMG/M
3300030990\|Ga0308178_1028002	All Organisms → cellular organisms → Bacteria	943	Open in IMG/M
3300030990\|Ga0308178_1036233	Not Available	866	Open in IMG/M
3300030990\|Ga0308178_1157989	Not Available	526	Open in IMG/M
3300031093\|Ga0308197_10197269	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	682	Open in IMG/M
3300031095\|Ga0308184_1055113	Not Available	523	Open in IMG/M
3300031096\|Ga0308193_1054759	Not Available	607	Open in IMG/M
3300031099\|Ga0308181_1010980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1307	Open in IMG/M
3300031125\|Ga0308182_1003285	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1050	Open in IMG/M
3300031424\|Ga0308179_1015407	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	794	Open in IMG/M
3300032205\|Ga0307472_100539564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium 13_1_20CM_3_63_8	1015	Open in IMG/M
3300032770\|Ga0335085_10001384	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	52433	Open in IMG/M
3300033412\|Ga0310810_10599937	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1058	Open in IMG/M
3300034644\|Ga0370548_112822	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300034680\|Ga0370541_007071	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1057	Open in IMG/M
3300034681\|Ga0370546_048366	Not Available	651	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.08%
Host-Associated	Host-Associated	7.92%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.12%
Plants	Host-Associated → Plants	7.92%
Aquatic	Environmental → Aquatic	2.97%
Unclassified	Environmental → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	88.12%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.95%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.97%
Sediment	Environmental → Aquatic → Sediment	1.98%
Freshwater	Environmental → Aquatic → Freshwater	0.99%
Unclassified	Environmental → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	81.19%
Loam	Environmental → Terrestrial → Soil → Loam	5.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.96%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.98%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.99%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.99%
Unclassified	Environmental → Unclassified → Unclassified → Unclassified	0.99%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	51.49%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	21.78%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.98%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.99%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.99%
Unclassified	Environmental → Unclassified → Unclassified → Unclassified → Unclassified	0.99%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	30.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	15.84%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	6.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.96%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.98%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.98%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.98%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.99%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.99%
	Environmental → Unclassified → Unclassified → Unclassified → Unclassified →	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.99%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908016	Sample 642	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300015265	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG	Host-Associated	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019279	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021415	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s1	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300024245	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK18	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026295	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300028705	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_115	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300030831	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_141 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030987	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_144 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030990	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_149 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031095	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_158 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031096	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_194 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031099	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_152 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031125	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_153 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031424	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_150 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300034644	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_123 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034680	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_116 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034681	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_121 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
OU_02411470	2124908016		STKMSQATEPREAQGAADDRAQRELTSKVGKTLTRQSKPSNASWSTWKSRLGISSKTEA
JGI10216J12902_1235886721	3300000956	Soil	MNEGTEPREAQAAADDRAELELTSKVGATLTRRSKPSNGKWSTWRGRLGMRSKTEA*
Ga0062595_1001291861	3300004479	Soil	MSQATEPRGGQGVADERAQRELTSKVGTRLTRRTKPSNGRWSSWKGRLGIRGSAEA*
Ga0062595_1005833832	3300004479	Soil	MSQATEPREGQGVADERVQRELTSKVGTTLTRRTKPSNGRWSTWKGRLGIRGRAEA*
Ga0066683_100564062	3300005172	Soil	MSQATEPRERQGVADQRAQRELTSKVGTPLTRRTKPSNGRWSTWKGRLGIRGRAEA*
Ga0066684_105500442	3300005179	Soil	MSEATEPREAQGVADERSQRELTSKVGTTLTRQSKPSNGKWSTWRGRLGIRGRAEA*
Ga0066678_109152291	3300005181	Soil	MSEATEPREAQGVADERSQRELTSKVGTTLTRQSKPSNGKWSTWRGRLGI
Ga0070680_1011605352	3300005336	Corn Rhizosphere	MSQATEPSEDRGVAEGRAQRELTSRVGVALTQQNKPSNGKWSTWRRRLGIGGKG*
Ga0070660_1003250703	3300005339	Corn Rhizosphere	MSQATEPSEDRGVAEGRAQRELTSRVGVALTQQNKPSNGKWSTWRRRLGIGGK
Ga0070703_100478782	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MSQATEPREAQGAADDRVQRELTSKVGATLTRRNKPSNGKWSTWKGRFGIRSRTDA*
Ga0070679_1003945391	3300005530	Corn Rhizosphere	MSQATEPSEDRGVAEGRAQRELTSRVGVALTQQNKPSNGKWSTWRRRLG
Ga0066697_100118031	3300005540	Soil	MSQATEPREDPGVAEDRAQRELTSRVGATLTRQSKPSNGRWSTWRGRLGIRGKAEA*
Ga0070695_1006907113	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	REGQGVADERAQRELTSKVGTTLTRRTKPSNGRWSTWRGRLGIRGRAEA*
Ga0066695_100661743	3300005553	Soil	MSQATEPREDPGVAEDRAQRELTSRVGATLTQQSKPSNGKWSTWRGRLGIRGKAEA*
Ga0066698_104595211	3300005558	Soil	REDPGVAEDRAQRELTSRVGATLTRQSKPSNGKWSTWRGRLGIRGKAEA*
Ga0066698_105353981	3300005558	Soil	MSQATEPREDPGVAEDRAQRELTSRVGATLTRQSKPSNSKWSTWRGRLGIRGRAEA*
Ga0068856_1010263742	3300005614	Corn Rhizosphere	MSQATEPTEDKGVAEGRAQRELTSRIGVTLTPQNKPSNGKWSTWRRRLGIGGKG*
Ga0066656_102374522	3300006034	Soil	MSQATEPREGQGVADQRAQRELTSKVGVPLTRRTKPSNGRWSTWKGRLGIRGRAEA*
Ga0066652_1004317762	3300006046	Soil	MSQATEPREGQGVADQRAQRELTSKVGTPLTRRTKPSNGRWSTWKGRLGIRGRAEA*
Ga0066652_1011586852	3300006046	Soil	MSQAMEPREAEGVAEERAQQKLTKSVGTTLAPRSKPSNGKWSTWRGRLGIRDKSEA*
Ga0079222_101791362	3300006755	Agricultural Soil	MSQATEPREGQGVADERAQRELTSKVGTTLTRRTKPSNGRWSTWRGRLGIRGRAEA*
Ga0079220_102629074	3300006806	Agricultural Soil	GQGVADERAQRELTSKVGTTLTRRTKPSNGRWSTWRGRLGIRGRAEA*
Ga0079220_108412983	3300006806	Agricultural Soil	ATEPRESYGAADDRAQRELTSKVGTTLTRQNKPSNSKWSTWKGRLGLGSRTEA*
Ga0066709_1011723542	3300009137	Grasslands Soil	MSQATEPREDPGVAEDRAQRELTSRVGATLTRQSKPSNGKWSTWRGRLGIRGKAEA*
Ga0066709_1041749661	3300009137	Grasslands Soil	MSQATEPREAEGVAEERAQQTLTKSVGTTLAPRSKPSNGKWSTWRGRLGIRDKSEA*
Ga0075423_125019561	3300009162	Populus Rhizosphere	ATEPREAQGAADDRVQRELTSKVGATLTRRNKPSNGKWSTWKGRFGIRSRTDA*
Ga0134086_103561442	3300010323	Grasslands Soil	MSQATEPREAEGVAEERAQQKLTKSVGTTLAPRSKPSNGKWSTWRGRLGIGGKAEA*
Ga0134063_100958182	3300010335	Grasslands Soil	MSEATEPREAQGVADERSQRELTSKVGTTLTRQSKPSNGKWSTWRGRLGIRGKAEA*
Ga0134126_106205201	3300010396	Terrestrial Soil	GVADERAQRELTSKVGTTLTRRTKPSNGRWSTWRGRLGIRGRAEA*
Ga0134126_126074772	3300010396	Terrestrial Soil	MSQATEPSEDRGVAEGRAQRELTSRIGVTLTPQNKPSIGKWSTWRRRLGIGGKG*
Ga0137364_102912362	3300012198	Vadose Zone Soil	MSQATEPREAEGVAEERAQQTLTKSVGTTLAPRSKPSNGKWSMWRGRLGIRDKSEA*
Ga0137364_107847911	3300012198	Vadose Zone Soil	MSQATEPREDRGAAEGRAQRELTSRVGVTLTPQKKPSNAKWSTWRGRLGIRGKA*
Ga0137382_100767401	3300012200	Vadose Zone Soil	MEPREAEGVAEERAQQKLTKSVGTTLAPRSKPSNGKWSTWRGRLGIRDKSEA*
Ga0137374_103091832	3300012204	Vadose Zone Soil	MSEATEPREAQGVADERSQRELTSKVGTTLTRQSKPSNSKWSTWRGRLGIRGRAEA*
Ga0137376_104291512	3300012208	Vadose Zone Soil	MEPREAEGVAEERAQQKLTKSVGTTLAPRSKPSNGKWSTWRGRLGIGGKAEA*
Ga0137372_1000617712	3300012350	Vadose Zone Soil	MSQATEPREGRGVAEDRTQRELTSRGGATLTRQSKPSNGKWSTWRGRLGIRGKAEA*
Ga0137372_104509612	3300012350	Vadose Zone Soil	MSQATEPREDPGVAEDRAQRELTSRVGATLTPQSKPSNGKWSTWRGRLGIRGKAEA*
Ga0137367_105541571	3300012353	Vadose Zone Soil	MSQATEPREGRGVAEDRTQRELTSRVGTTLTRQSKPSNGKWSTWRGRLGIRGKAEA*
Ga0137366_1000302311	3300012354	Vadose Zone Soil	MSQATEPREGRGVAEDRTQRELTSRVGATLTRQSKPSNGKWSTWRGRLGIRGKAEA*
Ga0137366_101706042	3300012354	Vadose Zone Soil	MSQATEPREGRGVAEDRAQRELTSRVGATLTPQSKPSNGKWSTWRGRLGIRGKAEA*
Ga0137373_109018412	3300012532	Vadose Zone Soil	MSQATEPREDPGVAEDRAQRELTSRVGATLTRQSKPSNGRWSMWRGRLGIRGKAEA*
Ga0134077_105227372	3300012972	Grasslands Soil	LASIERGSKEMSQATEPREDPGVAEDRAQRELTSRVGATLTRQSKPSNGRWSTWRGRLGIRGKAEA*
Ga0134087_101376342	3300012977	Grasslands Soil	MSQATEPREDPGVAEDRAQRELTSKVGATLTRQSKPSNGKWSTWRGRLGIRGKAEA*
Ga0164308_102583932	3300012985	Soil	MSQAPEPRENPGAAEGRTQRELTSRVGVTLTPQNKPSNGKWSTWTRRLGIGGKG*
Ga0134081_102861391	3300014150	Grasslands Soil	PREAQGVADERSQRELTSKVGTTLTRQSKPSNGKWSTWRGRLGIRGRAEA*
Ga0134078_100552702	3300014157	Grasslands Soil	MSQATEPREGQGVADQRAQRELTSRVGATLTRRTKPSNGRWSTWKGRLGIRGRAEA*
Ga0182008_100308794	3300014497	Rhizosphere	MSQATEPREGQGVTDERAQRELTSKVGTTLIRRTKPSNGRWSTWRGRLGIRGRAEA*
Ga0182005_11660442	3300015265	Rhizosphere	MNEATKPREAQGAADDRAQRELTSKVGTTLTRQSKPNNAKWSTWKGRLGIRSRTEA*
Ga0134069_10912362	3300017654	Grasslands Soil	MSQATEPREGQGVADQRAQRELTSKVGTPLTRRTKPSNGRWSTWKGRLGIRGRAEA
Ga0184619_102688711	3300018061	Groundwater Sediment	MSQATEPREAQRVADDRAQRELTSSVGATLARRTKPSNGRWSTWKGRLGIRDRADA
Ga0184619_104393442	3300018061	Groundwater Sediment	MSEVKEPREAHGAADDRAQRELTSKVGVTLTRQTKLSNGRWSTWKGRLGIRGG
Ga0066655_106655911	3300018431	Grasslands Soil	MSQATEPREDPGVAEDRAQRELTSRVGATLTRQSKPSNGRWSTRRGRLGIRGKAEA
Ga0066667_102450652	3300018433	Grasslands Soil	MSEATEPREAQGVADERSQRELTSKVGTTLTRQSKPSNGKWSTWRGRLGIRGRAEA
Ga0184642_16803482	3300019279	Groundwater Sediment	MSEVKEPREAHGAADDRAQRELTSKVGVTLTRQTKPSNGRWSTWKGRLGIRGG
Ga0193728_10738713	3300019890	Soil	MSEAKEPREAQGVADDRAQRELTSKVGATLTRQSKPSNGKWSTWRGRLGIGSRTET
Ga0193719_100629893	3300021344	Soil	MSQATEPREDRGVAEDRAQRELTSRVGVTLTPQTKPSNAKWSTWMGRLGIRGKG
Ga0193694_10064294	3300021415	Soil	MSQATEPSEDRGVAEGRAQRELTSRVGVTLTPQNKPSNGKWSTWRRRLGMGGKG
Ga0182009_106402641	3300021445	Soil	MSQATEPRGGQGVAEERAQRELTSKVGTTLTRRTKPSNGRWSTWKGRLGIRGRAEA
Ga0247677_10363391	3300024245	Soil	MSQGTEPREGQGVADQRAQGELTSKVGTTLTRRTKPSNGRWNPWKGRLGIRG
Ga0207684_100745912	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MSQATEPREAQGAADDRVQRELTSKVGATLTRRNKPSNGKWSTWKGRFGIRSRTDA
Ga0207684_103109622	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MSQATERREGEGVGSDRAQRKLTNSVGARLAPRSKPSNSRWSTLRRLGIRARPEA
Ga0207695_113084093	3300025913	Corn Rhizosphere	MSQATEPSEDRGVAEGRAQRELTSRVGVALTQQNKPSNGKWSTWRRRLGIGGKG
Ga0207677_101985562	3300026023	Miscanthus Rhizosphere	MSQATEPSEDRGVAEGRAQRELTSRVGVALTQQNKPSNGKWSTWRRRLGIG
Ga0207702_115355252	3300026078	Corn Rhizosphere	MSQATEPTEDKGVAEGRAQRELTSRIGVTLTPQNKPSNGKWSTWRRRLGIGGKG
Ga0209234_10257932	3300026295	Grasslands Soil	MSQATEPREDPGVAEDRAQRELTSKVGATLTRQSKPSNGKWSTWRGRLGIRGKAEA
Ga0209239_10190593	3300026310	Grasslands Soil	MSQATEPREDPGVAEDRAQRELTSRVGATLTRQSKPSNGKWSTWRGRLGIRGKAEA
Ga0209266_12010992	3300026327	Soil	MSQATEPRERQGVADQRAQRELTSKVGTPLTRRTKPSNGRWSTWKGRLGIRGRAEA
Ga0209057_10378251	3300026342	Soil	MSQATEPREDPGVAEDRAQRELTSRVGATLTRQSKPSNGRWSTWRGRLGIRGKAE
Ga0209808_10747731	3300026523	Soil	MSQATEPREDPGVAEDRAQRELTSRVGATLTRQSKPSNGRWSTWRGRLGIRGKAEA
Ga0209156_101510421	3300026547	Soil	MSEATEPREAQGVADERSQRELTSKVGTTLTRQSKPSNGKWSTWRGRLGIR
Ga0209156_103787321	3300026547	Soil	SCLDRERSKEMSHATRPREDPGVAEDRAQRELTSRVGATLTRQSKPSNGRWSTWRGRLGIRGKAEA
Ga0209074_101801152	3300027787	Agricultural Soil	MSQATEPREGQGVADERAQRELTSKVGTTLTRRTKPSNGRWSTWRGRLGI
Ga0307276_101953231	3300028705	Soil	SNEMSQATEPREGKGVAEDRAQRELTSRVGATLARNKPSNGKWSTWKGRLGRGKA
Ga0307293_100747911	3300028711	Soil	MSQATEPREGKGVAEDRAQRELTSRVGATLARNKPSNGKWSTWKGRLGRGKA
Ga0307298_101971803	3300028717	Soil	EEQEMSQATEPSEDRGVAEGRAQRELTSRVGVTLTPQNKPSNGKWSTWRRRLGMGGKG
Ga0307319_100003789	3300028722	Soil	MSQATEPRESQGDADDRAQRELTSKVGATLTRPSKPSNSKWSTWMGRLGIRREA
Ga0307320_100117931	3300028771	Soil	RGAEMSQATEPRESQGDADDRAQRELTSKVGATLTRPSKPSNSKWSTWMGRLGIRREA
Ga0307302_101918931	3300028814	Soil	MSQATEPREGRGVAEDRTQRELTTRVGATLARNKPSNGKWSTWKGRLGRGKAEA
Ga0307300_100963591	3300028880	Soil	QEMSQATEPSEDRGVAEGRAQRELTSRVGVTLTPQNKPSNGKWSTWRRRLGMGGKG
Ga0307277_100065447	3300028881	Soil	MSQATEPREGQGVADQRAQRELTSKVGAPLTRRIKPSNGSWSTWKGRLGIRGRAEA
Ga0307277_100586543	3300028881	Soil	MSQATEPGEGKGVAEDRAQLELTSRVGATLTRQSKPSNSKWSTWRGRLGIRSKA
Ga0307277_101001352	3300028881	Soil	MDKATEPREAQGAADDRAQRELTSRVGATLTRQSKSSNGKWSTWRGRLGMR
Ga0307277_104981121	3300028881	Soil	EAQGAADDRAQRELTSRVGATLTRQSKSSNGKWSTWRGRLGKRSKTEA
Ga0307308_105698872	3300028884	Soil	MSQATEPREAKGVADERAQRELTNRVGATLARRSKSSSSRWSTWRGRLGIRGRAIL
Ga0308152_1103022	3300030831	Soil	MSEVKEPREAHGAADDRAQRELTSKVGVTLTRQTKPSNGRWSTWKGRLGIRSG
Ga0308155_10055281	3300030987	Soil	TEPREGKGVAEDRAQRELTSRVGATLARNKPSNGKWSTWKGRLGRGKA
Ga0308178_10280021	3300030990	Soil	TEPRESQGDADDRAQRELTSKVGATLTRPSKPSNSKWSTWMGRLGIRREA
Ga0308178_10362333	3300030990	Soil	MSQATEPREAKGVADERAQRELTNRVGATLARRSKSSSSRWSTWRGRLGIRGRAIR
Ga0308178_11579893	3300030990	Soil	QATEPREDRGVAEDRAQRELTSRVGVTLTPQTKPSNAKWSTWMGRLGIRGKG
Ga0308197_101972693	3300031093	Soil	EDRGVAEGRAQRELTSRVGVTLTPQNKPSNGKWSTWRRRLGMGGKG
Ga0308184_10551131	3300031095	Soil	MSQATEPREDRGVADDRAQRELTSRVGVTLTPQTKPSNAKWSTWMGRLGIRGKG
Ga0308193_10547592	3300031096	Soil	MSQATEPREGQGVADQRAQRELTSKVGATLTRRTKPSNGRWSTWKGRLGIGGRAEA
Ga0308181_10109801	3300031099	Soil	CSCLDRERSNEMSQATEPREGKGVAEDRAQRELTSRVGATLARNKPSNGKWSTWKGRLGRGKA
Ga0308182_10032853	3300031125	Soil	ERSTKMSEVKEPREAHGAADDRAQRELTSKVGVTLTRQTKPSNGRWSTWKGRLGIRGG
Ga0308179_10154071	3300031424	Soil	MNEATEPRDEAQGAADDRAQRKLTSKVGTTLTRQSKPNNAKWSTWKSRLGIRSRTEA
Ga0307472_1005395641	3300032205	Hardwood Forest Soil	MSQATEPREAEGVAEARAQRKLTKSVGTTLAPRNKPSNGKWSTWRGRLGIGGKAES
Ga0335085_1000138438	3300032770	Soil	MSQATGPREGEGVAEQRAQQELTNRVGATLTRRSKPSDTRWRTWRHRLGIGGRAEA
Ga0310810_105999372	3300033412	Soil	MSQATEPRGGQGVAEERAQRELTTKVGTTLTRRTKPSNGRWSSWKGRLGIRGRAEA
Ga0370548_112822_112_282	3300034644	Soil	MSEATEPREAQGVADERSQRELTSKVGTTLTRQSKPSNGKWSTWRGRLGMRSKTEA
Ga0370541_007071_114_284	3300034680	Soil	MDKATEPREAQGAADDRAQRELTSRVGATLTRQSKSSNGKWSTWRGRLGKRSKTEA
Ga0370546_048366_3_191	3300034681	Soil	SCLDRERSNEMSQATEPREGKGVAEDRAQRELTSRVGATLARNKPSNGKWSTWKGRLGRGKA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103038

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences