Scaffold Ga0335085

Basic Information
Taxon OID	3300032770 Open in IMG/M
Scaffold ID	Ga0335085_10000938 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032770 Open in IMG/M

Scaffold ID

Ga0335085_10000938 Open in IMG/M

Source Dataset Name

Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	70250
Total Scaffold Genes	111 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	93 (83.78%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

70250

Total Scaffold Genes

111 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

93 (83.78%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5052	Long. (^o)	-80.2345	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Florida

Coordinates

Lat. (^o)

26.5052

Long. (^o)

-80.2345

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000795	Metagenome / Metatranscriptome	887	Y
F001118	Metagenome / Metatranscriptome	773	Y
F043740	Metagenome / Metatranscriptome	155	Y
F052115	Metagenome / Metatranscriptome	143	Y
F088100	Metagenome / Metatranscriptome	109	Y
F095904	Metagenome / Metatranscriptome	105	Y
F097766	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_10000938111	F001118	N/A	MGVTVELENLGDALLCREIVARVEHAFSDRKGAWQVSIAGSRESESWEMRVAGPNGFERTYTLSRTAGEHTPEAIRRLTLQLLPANPS
Ga0335085_1000093815	F000795	N/A	MNAQAIELDGFEIELASELYCERGGDHGELVERARTDRKRLGHNLDESVVLCVRCMKAIPLKA
Ga0335085_1000093841	F097766	AGGAGG	MKKLLFLSFAFALAISLFSLAQDTTKAAQTKPETAKAEKAPAKAVTVAGKVSSDAKTFVDKDNKSWTVTNPEALKSHEGHEVTLKAHVDSAKNEIQVVSVKMAKAEMKETTKKEEKK
Ga0335085_1000093846	F043740	AGGAGG	MELILSTEEQQLLLDILEQRHKELLKEISHTAHREFKQGLRKNEQLLESMMSRLRGVPAEELRA
Ga0335085_1000093855	F095904	AGGA	MKSKSIIALTFVFALALAAIFLPVAGLTVQANDRCQAFHMIVQGTLPTPNQFAPTDTWGGPIFGNLGTGFLQGGISGNDGTEYPHGSYSIFKDGFYEACLTPAPTWGGPNDCVDSFTYKAQAFVIWPAGDSLGSYKATAKIVKGTGRFASASGHLEIEGPFIVWPDTNSPFGVSGRWDAQFNGRLCGVQ
Ga0335085_1000093864	F088100	GGAGG	MSAAVITAIDTQSNDSTAVIRRYQNGYRVADAVVTFGQNLKLGGIFVGGVVFVAGLVEFILNPTEHHGFAVIFASLIAGAVLLILISQILAMGLRGEGHLLKAALDSDVNSSPFLSNPQRARAMELRKRPPAPPILPAWTE
Ga0335085_1000093874	F052115	AGGAGG	MKTLLHFKGHGDSYFHLHPQHVIFSVVATLMLTVLVVLILVSSAR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335085_10000938

Overview

Ecosystem & Geography

Associated Families

Sequences