Scaffold Ga0335085_10000744

Overview

Basic Information

• Taxon OID: 3300032770
• Scaffold ID: Ga0335085_10000744
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 83864
• Total Scaffold Genes: 87
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 72 (82.76%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5052
  • Long. (^o): -80.2345

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000673	Metagenome / Metatranscriptome	944	Y
F001966	Metagenome / Metatranscriptome	610	Y
F002076	Metagenome / Metatranscriptome	596	Y
F008273	Metagenome / Metatranscriptome	336	Y
F013823	Metagenome / Metatranscriptome	268	Y
F022721	Metagenome / Metatranscriptome	213	Y
F035881	Metagenome / Metatranscriptome	171	Y
F097751	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_1000074431	F035881	GGAG	MGPMEESWKNYERDRRRLNARLGLTVFALLPLPAILIAVGLSPLRMLLAVASLGMGIGILYPMWWRTKHNPFRATAIEARRRRIAWVCRPVGFLCGLAATLFWCVGGAAAEFGGVAFGVAAALLLWFSYFSDKKAEQDLPSTSD
Ga0335085_1000074439	F022721	GGGGG	MAAYDEMSEAERQLLAKTLGSLTGLQGGPTGSLPDGTHYEYDPNLKVTVEVTAAGERYPVTLVDGRFIREGERAVSHKAGE
Ga0335085_1000074440	F001966	AGG	MEKPDPHGEWVLFGTKQEAGEKPLPVDEELLAAAREAWPHVLAHARRELIDKESGSDRTALAADVWERVLRSVAKTRQRSRDYQPPISDLQSYLIGAFHHRFNRLLKSEHKRQETIELVASTVDLELIEGALDTEWAHELERAITLKQISNRMDGWTKKVWQARQYGYSWKDISRWLGVSEEQARKKFEYNVEKLRQSIVRLLKRNNLRPAG
Ga0335085_1000074458	F013823	AGGA	MENRKQQSGIDSVHDSSAFAWGLFLTIAAILAGAGLSLLPDLGVSRMVFPGAERVALAVMVLGFSGVLVTTLLNLSDATRRTLVVLFAAALLCSGFVALVVWFAVSGASGAQS
Ga0335085_1000074466	F097751	GAGG	MRSFLAMLFYIDHKCDTQPAFRKTFLVFTLIFVLLLWSPWRPLLCPVLGVCPAPVVRADAAPQPKPNSRLVKRVKRRSPAPSPAQIPAEPSVDAAVQP
Ga0335085_1000074469	F002076	AGG	MQKHYRQCLDKLAGDAPERKAALIRSLLPGIEAAVNSGQSLKKIWEALASEGLQMSYHSFHKAVWRARRRKPTAASNWGKQDKPSEAKALPETKVEAVEGRDPFANLKRLEENRPGFHWRGTRNMKAPVDRAEDSNDKHNR
Ga0335085_1000074470	F000673	GGAGG	MAKPRTERSLLFPSKEFREQVRKASKDRGFRSEQAFILAACEREIRRGDNTEAVTQFEARMAATLTNLAKQGQSLHTLAQAQVALTDVLLKYVITCVVEPPDDALPAARVRARLRYEKLVRAAAKEISNKNRDTLREMLVDE
Ga0335085_1000074472	F008273	GGAGG	MNTDNAAIRQDLIENSVDHQVSTLTSSATSPGQLETLLNSELDHDLIEWPRQYLETYLDSDATGRVPLNPEQLQDVLEAAFDRDGTAARNYLEELNGERGPTNLGDSKLQIVTRRGEGKDKGYELLFDPTDSQDLKHLIEQLDIRAWEKQNAQPTLALETKPGIERRETTASVATHQPGSGAVEIHDKITGTDVRKLLGGGELPAGLQSALKKMGPDARVKDAQTDSGIYRGAITGETDKKLIQQITSRIVVLHPKDLLDILPAVGENVRIAYSNDRASVVPVKDRSKTQEVRR