Scaffold Ga0335085

Basic Information
Taxon OID	3300032770 Open in IMG/M
Scaffold ID	Ga0335085_10000143 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032770 Open in IMG/M

Scaffold ID

Ga0335085_10000143 Open in IMG/M

Source Dataset Name

Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	228179
Total Scaffold Genes	200 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	140 (70.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

228179

Total Scaffold Genes

200 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

140 (70.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5052	Long. (^o)	-80.2345	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Florida

Coordinates

Lat. (^o)

26.5052

Long. (^o)

-80.2345

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001950	Metagenome / Metatranscriptome	613	Y
F003125	Metagenome / Metatranscriptome	506	Y
F045215	Metagenome / Metatranscriptome	153	Y
F054188	Metagenome / Metatranscriptome	140	Y
F067334	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_10000143118	F045215	AGGAG	MKYHPIGPDMKCPFCGQFNLVYKRPGLSGDVYRCASELGGCERTIVHRRRKGDTRCGVVAVLNFGQVGQWNPCFPTPQARAEER
Ga0335085_10000143155	F067334	GGAGG	MTGLTPKPDVPAPPRGFHIPQPLVLALSAGLAFAIFAIALIHVLPSPHSHADYLIVGTLATLAALITIFAGLVLGRRKK
Ga0335085_10000143186	F001950	AGG	MRILFSTTVLFSALAAFGQTGPGTVVVHSKFGGEIFGFDIDQNGTEGVLSESRTLPNGTILAAVETFDQATGAILDVVASTDTQDDFVTMGVVGNSVGLVEHEHVTGMFVSSRTFKTINPLSGNKLDGTWTPPIGPQNIIMPDGVSRNQGVPNVAVFVYDNSGNFMPLVFSSNVAANTFGPVITITDSLDFGSVPPPIAYNSKTNQAFLGGGDGCFGCFPVIGVANLTPGSFTTFQGIGFGFVNGMAVDSADDVLCTDTEDDAAVEFYDLPTHAASKVTLPNSGGQQIFSGADVEFDSVHKLFLVAQPFSSSASSGSSIYVYDTKGNVQETLNGFSFSNVSTVVPLHLALNPSNRTGYVDGPGNGELQSFTY
Ga0335085_1000014343	F054188	N/A	VRFASYCVICVSLALASSLPLRSQDPPATQQQPDQYFAGFVTALSETSITVTRTVLGKSTVRTFAITHETVIQGGKPKVKSKVTVKWIAGDSGDQALKIILRGGAAPKKS
Ga0335085_1000014369	F003125	N/A	MDPFRVVRQSWAPGETREVEASRIDRQIGMEYDSYRRIYLADGHEWTIAGQIARDDGKKYYILECVA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335085_10000143

Overview

Ecosystem & Geography

Associated Families

Sequences