NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335085_10000006

Scaffold Ga0335085_10000006


Overview

Basic Information
Taxon OID3300032770 Open in IMG/M
Scaffold IDGa0335085_10000006 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)940629
Total Scaffold Genes814 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)603 (74.08%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001399Metagenome / Metatranscriptome705Y
F008761Metagenome / Metatranscriptome328Y
F026066Metagenome / Metatranscriptome199Y
F029408Metagenome / Metatranscriptome188Y
F058297Metagenome / Metatranscriptome135Y
F076634Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0335085_10000006104F029408AGGMKTSASRSLVRKTRSFSLDPDVLREVDRTKGQDSASERVNSLLKYALEMERKASLDQEASEFFAHAPDDREERRAFQKANLKTWTRP
Ga0335085_10000006176F026066AGGAGMTRTLAGITLVVLALGLSISAFAGAKSQTITLFHDAQLNGKTLPAGEYDVKCDTTGSNAQVKFLRNGKEVASATGQVKQLSNAPEHNQLVTTDGNGGATISEIDFAHSNTGVTFESSAMTSAGSN
Ga0335085_10000006262F058297N/AMKKLGLALLLLLLLSAVAAAADTYRQGKILKWENSTYAAKHKEAKNWVVYQLQTDTGNYSIARQKETKPQMQAGDIVQYELKKKDKVEVIDAKGKKREYQIVGQSAAPGQ
Ga0335085_10000006325F076634AGGMAQDQAYTNRFVDVHEKVKAFKDRVRDAKNSDAEVRESRAAQEAKEVLDKEVK
Ga0335085_10000006332F001399AGGAGGMKLNETITTYDIAEALQGETGKFEVISPNGERYFVTCSPGHSISNLEWAGNEPNLQPFLVRKVAQPVAMPEGRSRKAAA
Ga0335085_10000006687F008761N/AMARKQNDLKALRRMIGDAHDILRTTILPEERSQRAYELLTAALHLADNLLEESPAAALGAKGGKQTAKRGSEYFRQIAAKRKTRSGGRPKKHKIQ
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