Scaffold Ga0325410_1000415

Overview

Basic Information

• Taxon OID: 3300032735
• Scaffold ID: Ga0325410_1000415
• Source Dataset Name: Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdIQD-R3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43842
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (26.83%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 32.1348
  • Long. (^o): -81.9657

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008251	Metagenome	336	Y
F016904	Metagenome	243	Y
F063214	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0325410_100041524	F063214	N/A	MLTTNQVSFIEQVSVIPYGLGYESAKYLLYQGYAT
Ga0325410_100041525	F016904	N/A	MLLIKPKNTRIQKRRLKSNLSILWLSLVDQFMRLIEGSITGMKDCSWLINCSVVATEIMICHAKDVRNSCSTA
Ga0325410_100041527	F008251	N/A	MDTTLEKLKKYFPALPPNAIAKIYRARCARLRLLMNHGILEDILWLIEAKVRLSGESSNSFISYMPKTGKSNFAKKRCAKRLKLYHRCAKWTCNAQCRSLGMVFINRKDKIQFIKEGLSKGSLDNLLLTLETHLSGDVHRAIHDL