NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325405_1001437

Scaffold Ga0325405_1001437


Overview

Basic Information
Taxon OID3300032389 Open in IMG/M
Scaffold IDGa0325405_1001437 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24125
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (8.70%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002798Metagenome529Y
F037802Metagenome167Y
F063214Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0325405_100143716F037802GAGMLCVNGKVDESEQIRLLTFGENSSRRMRELGSGSFLGILVLDD
Ga0325405_100143718F063214N/AMLTTNQVPFIAQVSVIPYNMGYENAKYLLYQVLYNINLD
Ga0325405_100143721F002798N/AMVSVHREDKIQFIKDGLSKGSSDNLLLTLETHPSGDVHRAIHDLWPQFHKEHARHSLGNLTKKDLVCQFLRKLDGKPIPDP

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