Scaffold Ga0316204_10163381

Overview

Basic Information

• Taxon OID: 3300032373
• Scaffold ID: Ga0316204_10163381
• Source Dataset Name: Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 6-month pyrrhotite 2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1821
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Maine
• Coordinates
  • Lat. (^o): 43.8603
  • Long. (^o): -69.5781

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005537	Metagenome / Metatranscriptome	397	Y
F030149	Metagenome / Metatranscriptome	186	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0316204_101633811	F005537	N/A	KINKEIMSDNVKFISELERLLNEKQSDYGHFDNTSFVMAGIIEKYLSVYNNKDIKVPLKFFGIFMVFLKLWRVMQSDSYKKDSFDDINGYAELLRRLVINDENSKR
Ga0316204_101633816	F030149	GGAG	MFVPVNDKLNKIVPELKDQDEFDHYKSIIRDMIANGHAAHQSIPGYDTCKPEIEAFRWFDGINIPVHGYCDLKGDKLIIEDKCKFPRKGIVKKDGTRSWLTKKLPENSPEPFHLLQIDFYYSVFKVPVYLCYINEKSYKVFHAGNCEELKPENIEKRIPKIIQR