Scaffold Ga0325401_1009837

Overview

Basic Information

• Taxon OID: 3300032355
• Scaffold ID: Ga0325401_1009837
• Source Dataset Name: Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9284
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (46.15%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 32.1348
  • Long. (^o): -81.9657

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008251	Metagenome	336	Y
F056276	Metagenome	137	Y
F089605	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0325401_100983710	F008251	GAGG	MNHGILEDIRWLIEAKVRLSSEFSNSFISCMPRISKSTFAKKKNHAKQLKVYHRCARWTCNATCHSLGMVSINCEDKIQFIKDGLSKGSLDNLLLTLETHPSGDVHHAIHDLWPQFHKEHDRLSLGNLTIKDPVCQFLRKLDGKPIPNP
Ga0325401_100983713	F089605	AGGA	MAKLRKEMIGAVQTRTLFGNRVIYGVVDLGFKSALYGWKDKT
Ga0325401_10098379	F056276	N/A	MRIGEEIQRREKEQIIAQIYTDISYYGKLKESTEVTEYRYPPFDRGEKD