NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325403_1003905

Scaffold Ga0325403_1003905


Overview

Basic Information
Taxon OID3300032354 Open in IMG/M
Scaffold IDGa0325403_1003905 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13739
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012641Metagenome278Y
F040184Metagenome162Y
F096309Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0325403_10039053F096309N/AMFDSLKLFSSTHVTSIGPIAPKSVDFKVLGVKTPIQA
Ga0325403_10039055F040184GAGMQSYHLYVGQLESLIFSFFLEHVYVQIVVIVDHILPWFYVQEGLKRSLWVGDKLRIQFFKKLTNMVFLVRLPRLSRSCSL
Ga0325403_10039056F012641N/AMCFRMDFLNTTKIVFLHFWILQHVCKTPKGIGQYSKKYKTLILGGIHLLFTANVWIKKSLKDEYPKYYWE

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