Scaffold Ga0310345_10000539

Overview

Basic Information

• Taxon OID: 3300032278
• Scaffold ID: Ga0310345_10000539
• Source Dataset Name: Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 53417
• Total Scaffold Genes: 81
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 67 (82.72%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location

• Location Name: Pacific Ocean: North Pacific Subtropical Gyre
• Coordinates
  • Lat. (^o): 22.7719
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025051	Metagenome / Metatranscriptome	203	Y
F027864	Metagenome	193	Y
F063766	Metagenome	129	Y
F105355	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310345_1000053910	F105355	AGAAGG	MKVLNSCDSSDKLTLLLNIRQGTQSTTYSVSNLPAWYEMLGIFTLYCIVAISMFYAGLWIASRYMSPGR
Ga0310345_1000053911	F063766	AGGAGG	MALNKQKKLEYIEQILEEVQNGSVDSKEDSILIEVALEFVNDIKEGSLDEGT
Ga0310345_1000053944	F027864	N/A	MRRYTEVHKHRNYLYTIEKKEKNKWILDWDCGAYISYDVAEQIMQDFEKYNKHPGKYRIVMYISEKPHDE
Ga0310345_1000053946	F025051	N/A	MNKNINLEIAGNNTLSRTACALLLPLTLLSNKNNEIDKEEFMNSVSWIKDYRTWDKYWSELEENNVLVQLDTKKWMVCPHVCYSDGASHNELITKWNEVSNAIN