NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F063766

Metagenome Family F063766

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F063766
Family Type Metagenome
Number of Sequences 129
Average Sequence Length 51 residues
Representative Sequence MALNKQKKLQYIEQILEEVKNGSVDDKEDSILIEVALDFIEDLKEGSSDGGT
Number of Associated Samples 77
Number of Associated Scaffolds 129

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 84.50 %
% of genes near scaffold ends (potentially truncated) 27.13 %
% of genes from short scaffolds (< 2000 bps) 85.27 %
Associated GOLD sequencing projects 74
AlphaFold2 3D model prediction Yes
3D model pTM-score0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (88.372 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(28.682 % of family members)
Environment Ontology (ENVO) Unclassified
(91.473 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(68.217 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 46.25%    β-sheet: 0.00%    Coil/Unstructured: 53.75%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.40
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 129 Family Scaffolds
PF13479AAA_24 5.43
PF13604AAA_30 1.55
PF08774VRR_NUC 1.55
PF00136DNA_pol_B 0.78
PF07022Phage_CI_repr 0.78
PF00940RNA_pol 0.78

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 129 Family Scaffolds
COG0417DNA polymerase B elongation subunitReplication, recombination and repair [L] 0.78
COG5108Mitochondrial DNA-directed RNA polymeraseTranscription [K] 0.78


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A88.37 %
All OrganismsrootAll Organisms11.63 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001683|GBIDBA_10024376Not Available3123Open in IMG/M
3300005400|Ga0066867_10000467All Organisms → cellular organisms → Bacteria19620Open in IMG/M
3300005427|Ga0066851_10005146All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria5646Open in IMG/M
3300005427|Ga0066851_10050239Not Available1420Open in IMG/M
3300005427|Ga0066851_10132594Not Available799Open in IMG/M
3300005428|Ga0066863_10300032Not Available557Open in IMG/M
3300005429|Ga0066846_10039048Not Available1720Open in IMG/M
3300005431|Ga0066854_10055869Not Available1307Open in IMG/M
3300005509|Ga0066827_10330091Not Available515Open in IMG/M
3300005514|Ga0066866_10260244Not Available598Open in IMG/M
3300005605|Ga0066850_10250195Not Available632Open in IMG/M
3300006310|Ga0068471_1041831Not Available1877Open in IMG/M
3300006310|Ga0068471_1448832All Organisms → Viruses → Predicted Viral1385Open in IMG/M
3300006310|Ga0068471_1466320Not Available772Open in IMG/M
3300006324|Ga0068476_1369730Not Available520Open in IMG/M
3300006325|Ga0068501_1119592Not Available1982Open in IMG/M
3300006335|Ga0068480_1511546Not Available933Open in IMG/M
3300006336|Ga0068502_1470142Not Available1168Open in IMG/M
3300006336|Ga0068502_1496109All Organisms → Viruses → Predicted Viral1073Open in IMG/M
3300006336|Ga0068502_1503323Not Available1120Open in IMG/M
3300006340|Ga0068503_10348689Not Available783Open in IMG/M
3300006340|Ga0068503_10428780Not Available997Open in IMG/M
3300006738|Ga0098035_1140533Not Available825Open in IMG/M
3300006751|Ga0098040_1034834Not Available1600Open in IMG/M
3300006751|Ga0098040_1052466Not Available1265Open in IMG/M
3300006753|Ga0098039_1018248All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2538Open in IMG/M
3300006754|Ga0098044_1178041Not Available843Open in IMG/M
3300006793|Ga0098055_1116918Not Available1036Open in IMG/M
3300006793|Ga0098055_1172007Not Available829Open in IMG/M
3300006900|Ga0066376_10508476Not Available679Open in IMG/M
3300006902|Ga0066372_10288524Not Available924Open in IMG/M
3300006925|Ga0098050_1112728Not Available692Open in IMG/M
3300008050|Ga0098052_1375424Not Available530Open in IMG/M
3300009173|Ga0114996_10796778Not Available684Open in IMG/M
3300009619|Ga0105236_1023275Not Available731Open in IMG/M
3300009619|Ga0105236_1059289Not Available521Open in IMG/M
3300009622|Ga0105173_1056046Not Available672Open in IMG/M
3300010151|Ga0098061_1042458Not Available1792Open in IMG/M
3300010151|Ga0098061_1054442Not Available1551Open in IMG/M
3300010153|Ga0098059_1006353All Organisms → cellular organisms → Bacteria5136Open in IMG/M
3300010153|Ga0098059_1052770Not Available1632Open in IMG/M
3300010153|Ga0098059_1205005Not Available767Open in IMG/M
3300010153|Ga0098059_1385703Not Available530Open in IMG/M
3300010883|Ga0133547_11375833Not Available1334Open in IMG/M
3300012950|Ga0163108_10372696Not Available920Open in IMG/M
3300013098|Ga0164320_10347533Not Available724Open in IMG/M
3300017775|Ga0181432_1018702Not Available1773Open in IMG/M
3300017775|Ga0181432_1242029Not Available569Open in IMG/M
3300017775|Ga0181432_1255933Not Available553Open in IMG/M
3300017775|Ga0181432_1289573Not Available519Open in IMG/M
3300020291|Ga0211524_1031288Not Available884Open in IMG/M
3300020373|Ga0211660_10185118Not Available727Open in IMG/M
3300020373|Ga0211660_10228110Not Available634Open in IMG/M
3300020383|Ga0211646_10074008Not Available1266Open in IMG/M
3300020389|Ga0211680_10089021Not Available1306Open in IMG/M
3300020389|Ga0211680_10216169Not Available732Open in IMG/M
3300020398|Ga0211637_10001853All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium10949Open in IMG/M
3300020407|Ga0211575_10136532Not Available1022Open in IMG/M
3300020423|Ga0211525_10012459All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae4984Open in IMG/M
3300020427|Ga0211603_10195745Not Available757Open in IMG/M
3300020434|Ga0211670_10509878Not Available513Open in IMG/M
3300020444|Ga0211578_10000397Not Available21255Open in IMG/M
3300020444|Ga0211578_10153381Not Available912Open in IMG/M
3300020444|Ga0211578_10517844Not Available502Open in IMG/M
3300020447|Ga0211691_10067399Not Available1289Open in IMG/M
3300020458|Ga0211697_10087622Not Available1295Open in IMG/M
3300021065|Ga0206686_1019164Not Available1990Open in IMG/M
3300021068|Ga0206684_1098681Not Available989Open in IMG/M
3300021084|Ga0206678_10198519Not Available997Open in IMG/M
3300021087|Ga0206683_10343591Not Available755Open in IMG/M
3300021089|Ga0206679_10096800Not Available1720Open in IMG/M
3300021089|Ga0206679_10342597Not Available804Open in IMG/M
3300021352|Ga0206680_10162421Not Available866Open in IMG/M
3300021442|Ga0206685_10003507Not Available4798Open in IMG/M
3300021442|Ga0206685_10024187Not Available1936Open in IMG/M
3300021442|Ga0206685_10120096Not Available873Open in IMG/M
3300021442|Ga0206685_10127624Not Available846Open in IMG/M
3300021442|Ga0206685_10231201Not Available624Open in IMG/M
3300021443|Ga0206681_10205618Not Available769Open in IMG/M
3300021443|Ga0206681_10345854Not Available575Open in IMG/M
3300021791|Ga0226832_10114903All Organisms → cellular organisms → Bacteria996Open in IMG/M
3300021791|Ga0226832_10352082Not Available611Open in IMG/M
(restricted) 3300022931|Ga0233433_10407922Not Available532Open in IMG/M
(restricted) 3300024261|Ga0233439_10033270Not Available3203Open in IMG/M
3300025052|Ga0207906_1042938Not Available613Open in IMG/M
3300025069|Ga0207887_1086899Not Available508Open in IMG/M
3300025112|Ga0209349_1101062Not Available823Open in IMG/M
3300026200|Ga0208894_1036909Not Available1624Open in IMG/M
3300026209|Ga0207989_1070052Not Available926Open in IMG/M
3300026260|Ga0208408_1156505Not Available633Open in IMG/M
3300027677|Ga0209019_1125781Not Available709Open in IMG/M
3300027699|Ga0209752_1100020Not Available874Open in IMG/M
3300028198|Ga0257121_1223758Not Available589Open in IMG/M
3300028535|Ga0257111_1254255Not Available509Open in IMG/M
3300031689|Ga0308017_1048691Not Available903Open in IMG/M
3300031757|Ga0315328_10008105Not Available5271Open in IMG/M
3300031757|Ga0315328_10323340Not Available900Open in IMG/M
3300031757|Ga0315328_10419222All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium776Open in IMG/M
3300031757|Ga0315328_10827578Not Available516Open in IMG/M
3300031773|Ga0315332_10230386Not Available1200Open in IMG/M
3300031801|Ga0310121_10189149Not Available1259Open in IMG/M
3300031861|Ga0315319_10264924Not Available867Open in IMG/M
3300031861|Ga0315319_10505070Not Available603Open in IMG/M
3300031861|Ga0315319_10510809Not Available599Open in IMG/M
3300031886|Ga0315318_10272634Not Available970Open in IMG/M
3300031886|Ga0315318_10803701Not Available524Open in IMG/M
3300032048|Ga0315329_10182340Not Available1099Open in IMG/M
3300032048|Ga0315329_10361785Not Available772Open in IMG/M
3300032130|Ga0315333_10177191Not Available1009Open in IMG/M
3300032130|Ga0315333_10483437Not Available582Open in IMG/M
3300032278|Ga0310345_10000539Not Available53417Open in IMG/M
3300032278|Ga0310345_10004964All Organisms → cellular organisms → Bacteria11935Open in IMG/M
3300032278|Ga0310345_10015339Not Available6418Open in IMG/M
3300032278|Ga0310345_10073873All Organisms → Viruses → Predicted Viral2935Open in IMG/M
3300032278|Ga0310345_10084590Not Available2748Open in IMG/M
3300032278|Ga0310345_10149748Not Available2082Open in IMG/M
3300032278|Ga0310345_10595304Not Available1064Open in IMG/M
3300032278|Ga0310345_10615413All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium1047Open in IMG/M
3300032278|Ga0310345_10845742Not Available891Open in IMG/M
3300032278|Ga0310345_11322595Not Available705Open in IMG/M
3300032278|Ga0310345_12064552Not Available553Open in IMG/M
3300032360|Ga0315334_10010418Not Available6054Open in IMG/M
3300032360|Ga0315334_10056667All Organisms → Viruses → Predicted Viral2862Open in IMG/M
3300032360|Ga0315334_10199966All Organisms → Viruses → Predicted Viral1619Open in IMG/M
3300032360|Ga0315334_10363401Not Available1218Open in IMG/M
3300032360|Ga0315334_11513707Not Available575Open in IMG/M
3300032360|Ga0315334_11834708Not Available514Open in IMG/M
3300032820|Ga0310342_101362934Not Available842Open in IMG/M
3300032820|Ga0310342_102588217Not Available607Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine28.68%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater26.36%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine12.40%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater10.08%
MarineEnvironmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine7.75%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater3.10%
Marine OceanicEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic2.33%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine1.55%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater1.55%
Hydrothermal Vent FluidsEnvironmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids1.55%
MarineEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Marine0.78%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater0.78%
MarineEnvironmental → Aquatic → Marine → Inlet → Unclassified → Marine0.78%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine0.78%
Hydrothermal Vent PlumeEnvironmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume0.78%
Marine SedimentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment0.78%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001683Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assemblyEnvironmentalOpen in IMG/M
3300005400Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV261EnvironmentalOpen in IMG/M
3300005427Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV65EnvironmentalOpen in IMG/M
3300005428Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV253EnvironmentalOpen in IMG/M
3300005429Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV76EnvironmentalOpen in IMG/M
3300005431Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV75EnvironmentalOpen in IMG/M
3300005509Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV51EnvironmentalOpen in IMG/M
3300005514Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV263EnvironmentalOpen in IMG/M
3300005605Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV67EnvironmentalOpen in IMG/M
3300006310Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500mEnvironmentalOpen in IMG/M
3300006324Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0500mEnvironmentalOpen in IMG/M
3300006325Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_0500mEnvironmentalOpen in IMG/M
3300006335Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_2_0500mEnvironmentalOpen in IMG/M
3300006336Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0500mEnvironmentalOpen in IMG/M
3300006340Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770mEnvironmentalOpen in IMG/M
3300006738Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaGEnvironmentalOpen in IMG/M
3300006751Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaGEnvironmentalOpen in IMG/M
3300006753Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaGEnvironmentalOpen in IMG/M
3300006754Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006900Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_AEnvironmentalOpen in IMG/M
3300006902Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_250_ad_251m_LV_AEnvironmentalOpen in IMG/M
3300006925Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaGEnvironmentalOpen in IMG/M
3300008050Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaGEnvironmentalOpen in IMG/M
3300009173Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134EnvironmentalOpen in IMG/M
3300009619Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3827_250EnvironmentalOpen in IMG/M
3300009622Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3321_4155EnvironmentalOpen in IMG/M
3300010151Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaGEnvironmentalOpen in IMG/M
3300010153Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaGEnvironmentalOpen in IMG/M
3300010883western Arctic Ocean co-assemblyEnvironmentalOpen in IMG/M
3300012950Marine microbial communities from the Central Pacific Ocean - Fk160115 155m metaGEnvironmentalOpen in IMG/M
3300013098Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay11, Core 4567-28, 0-3 cmEnvironmentalOpen in IMG/M
3300017775Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17EnvironmentalOpen in IMG/M
3300020291Marine microbial communities from Tara Oceans - TARA_B100000315 (ERX556069-ERR599031)EnvironmentalOpen in IMG/M
3300020373Marine microbial communities from Tara Oceans - TARA_B100000959 (ERX555949-ERR598946)EnvironmentalOpen in IMG/M
3300020383Marine microbial communities from Tara Oceans - TARA_B100000929 (ERX556043-ERR598971)EnvironmentalOpen in IMG/M
3300020389Marine microbial communities from Tara Oceans - TARA_B100000809 (ERX556139-ERR599008)EnvironmentalOpen in IMG/M
3300020398Marine microbial communities from Tara Oceans - TARA_B100000949 (ERX555993-ERR599072)EnvironmentalOpen in IMG/M
3300020407Marine microbial communities from Tara Oceans - TARA_B100001105 (ERX556033-ERR599115)EnvironmentalOpen in IMG/M
3300020423Marine microbial communities from Tara Oceans - TARA_B100000315 (ERX556027-ERR599062)EnvironmentalOpen in IMG/M
3300020427Marine microbial communities from Tara Oceans - TARA_B000000460 (ERX555922-ERR598960)EnvironmentalOpen in IMG/M
3300020434Marine microbial communities from Tara Oceans - TARA_B100001013 (ERX555944-ERR599071)EnvironmentalOpen in IMG/M
3300020444Marine microbial communities from Tara Oceans - TARA_B100001245 (ERX556114-ERR598980)EnvironmentalOpen in IMG/M
3300020447Marine microbial communities from Tara Oceans - TARA_B100000745 (ERX556090-ERR599159)EnvironmentalOpen in IMG/M
3300020458Marine microbial communities from Tara Oceans - TARA_B100000749 (ERX556123-ERR599000)EnvironmentalOpen in IMG/M
3300021065Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 500m 12015EnvironmentalOpen in IMG/M
3300021068Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 100m 12015EnvironmentalOpen in IMG/M
3300021084Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 12015EnvironmentalOpen in IMG/M
3300021087Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 80m 12015EnvironmentalOpen in IMG/M
3300021089Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 12015EnvironmentalOpen in IMG/M
3300021352Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 150m 12015EnvironmentalOpen in IMG/M
3300021442Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 200m 12015EnvironmentalOpen in IMG/M
3300021443Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 12015EnvironmentalOpen in IMG/M
3300021791Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Daikoku_FS921 150_kmerEnvironmentalOpen in IMG/M
3300022931 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_100_MGEnvironmentalOpen in IMG/M
3300024261 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_100_MGEnvironmentalOpen in IMG/M
3300025052Marine viral communities from the Pacific Ocean - LP-37 (SPAdes)EnvironmentalOpen in IMG/M
3300025069Marine viral communities from the Pacific Ocean - LP-38 (SPAdes)EnvironmentalOpen in IMG/M
3300025112Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)EnvironmentalOpen in IMG/M
3300026200Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV49 (SPAdes)EnvironmentalOpen in IMG/M
3300026209Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV65 (SPAdes)EnvironmentalOpen in IMG/M
3300026260Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV67 (SPAdes)EnvironmentalOpen in IMG/M
3300027677Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_300m (SPAdes)EnvironmentalOpen in IMG/M
3300027699Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_250m (SPAdes)EnvironmentalOpen in IMG/M
3300028198Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI106_100EnvironmentalOpen in IMG/M
3300028535Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_500mEnvironmentalOpen in IMG/M
3300031689Marine microbial communities from water near the shore, Antarctic Ocean - #280EnvironmentalOpen in IMG/M
3300031757Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 32315EnvironmentalOpen in IMG/M
3300031773Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 34915EnvironmentalOpen in IMG/M
3300031801Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986EnvironmentalOpen in IMG/M
3300031861Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 3416EnvironmentalOpen in IMG/M
3300031886Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 3416EnvironmentalOpen in IMG/M
3300032048Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 32315EnvironmentalOpen in IMG/M
3300032130Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 34915EnvironmentalOpen in IMG/M
3300032278Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MGEnvironmentalOpen in IMG/M
3300032360Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915EnvironmentalOpen in IMG/M
3300032820Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - S1503-DNA-20-500_MGEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
GBIDBA_1002437623300001683Hydrothermal Vent PlumeMRRRTMALNKQKKLDYIQQVLEEVKNGHVDDKEDSILIDVEDLKEGSSDGRT*
Ga0066867_10000467113300005400MarineMALNKQKKLQYIEQILEEVKNGTVDDKEDSILIDVALDFIEEIKKEGDMKK*
Ga0066851_1000514613300005427MarineMALNKQKKLQYIEQILEEIKNGSIDDKEDSILIDVALDFINDLKEGSSDGGT*
Ga0066851_1005023953300005427MarineMALNKQKKLQYIEQILEEIKNGAIDDKEDSILIDVALDFINDL
Ga0066851_1013259433300005427MarineMSLNKQKKLQYIEQILEEVKNGSIDDKEDSILIDVALDFVEDLKEGQSDGNT*
Ga0066863_1030003213300005428MarineMSLNKQKKLQYIEQILEEVKNGTVDDKEDSILIDVALDFIEEI
Ga0066846_1003904823300005429MarineMKRRTTMALNKQKKLQYIEQILEEVKNGTVDDKEDSILIDVALDFIEEIKKEGDMKK*
Ga0066854_1005586923300005431MarineMTLNKQKKVEYIRQILDEIKNGNINGNEDSILVEVALDFIEDLTERSSDGGDA*
Ga0066827_1033009113300005509MarineMALNKQKKLQYIEQILEEVKNGSIDDKEDSVLIDVALDFINDLKEGSSD
Ga0066866_1026024433300005514MarineYIEQILEEIKNGAIDDKEDSILIDVALDFINDLKEGSSDGGT*
Ga0066850_1025019523300005605MarineMALNKQKKLQYIEQILEEIKNGAIDDKEDSILIDVALDFVEDLKGPEGIKDD*
Ga0068471_104183143300006310MarineRKMALNKQKKLEYIEQILEEVQNGSVDSKEDSILIEVALEFVNDIKEGSLDEGT*
Ga0068471_144883233300006310MarineMALNKQKKLQYIEQILEEVKNGSIDDKEDSILIDVALDFVEDLKEGKSDGGT*
Ga0068471_146632043300006310MarineLRRKRMSLNKQKKLEYISHVLEQVVNDSIDGKEDSILIEVALDFIEDIKGGGSDGGT*
Ga0068476_136973023300006324MarineMALNKHKKIEYIRHVLEQVVNDSIDGKDDSILIEVALYFIEDIGGSDERPT*
Ga0068501_111959243300006325MarineMALNKQKKLEYIEQILEEVQNGSVDSKEDSILIEVALEFVNDIKEGSLDEGT*
Ga0068480_151154623300006335MarineMALNKQKKLEYIQQILEEVVNDSIDGKEDSILIEVALDFIEDIKGGSDGGST*
Ga0068502_147014243300006336MarineMALNKQKKLEYIEQILDNVKDGSIELDHNDSILLEVALDFVEDLKGGGSDEGGT*
Ga0068502_149610943300006336MarineMSLNKQKKLEYIEQILEEIKNGSIDDKEDSILIDVALDFVEDLKEGKSDGGT*
Ga0068502_150332313300006336MarineMALNKQKKIEYIRHVLEQVVNDSIDGKDDSILIEVALDFIEDIKGGGSD
Ga0068503_1034868923300006340MarineMALNKQKKLEYISHVLEHVINDSIDGKEDSILIEVALDFIEDIKGGGSDGGNA*
Ga0068503_1042878033300006340MarineMALNKQKKLQYIEQILDEVKNGTIDGDEDSILVEVALEFINDIKEGSPDGGT*
Ga0098035_114053323300006738MarineMSLNKQKKLQYIEQILEEVKNGTVDDKEDSILIDVALDFIEEIKKEGDMKK*
Ga0098040_103483463300006751MarineMALNKQKKLQYIEQILEEIKNGAIDDKEDSILIDVA
Ga0098040_105246633300006751MarineMALNKQKKLQYIEQILEEIKNGAIDDKEDSILIDVALDFINDLKEGSSDGGT*
Ga0098039_101824843300006753MarineMNKQKKLQYIEQILEGIKNGVIEDKEDSILIEVALDFINDIKNEGDIKN*
Ga0098044_117804113300006754MarineKQKKLQYIEQILEEIKNGAIDDKEDSILIDVALDFINDLKEGSSDGGT*
Ga0098055_111691813300006793MarineQKKLQYIEQILEEIKNGAIDDKEDSILIDVALDFINDLKEGSSDGGT*
Ga0098055_117200733300006793MarineMMALNKQKKLQYIEQILEEIKNGSIDDKEDSILIDVALDFVEDLKEGKSDGGT*
Ga0066376_1050847623300006900MarineMILNKHKKLEYVKQILEEVKNGSIDDREDSILIEVALQFVDDLKEGAPNGDN*
Ga0066372_1028852443300006902MarineMALNKQKKLQYIGQILEEVKNGSIDDKEDSILIDVALDFVEDLKEGKSNGGT*
Ga0098050_111272823300006925MarineMMALNKQKKLQYIEQILEEIKNGAIDDKEDSILIDVALDFINDLKEGSSDGGT*
Ga0098052_137542423300008050MarineMALNKQKKLSYIEQILEEVKNGSIEGKEDSILIDVALDFIEDLIEGKSDGDT*
Ga0114996_1079677823300009173MarineMSLNKHRKLEYIEQILEEIKNGHVDDKEDSILIDVALDFIEDLKGLQETKDD*
Ga0105236_102327543300009619Marine OceanicMSLNKQKKLQYIEQILEEIKNGSIDDKEDSILIDVALDFVEDLKEGKSDGDT*
Ga0105236_105928913300009619Marine OceanicMALNKQKKLQYIEQILEEVKNGSVDDKEDSILIEVALDFIEDLKEGKSDGGT*
Ga0105173_105604613300009622Marine OceanicMALSKAKKIEYVAQILEEVKNGSIDDKEDSILIEVALQFVDDLKEGAPNGDN*
Ga0098061_104245833300010151MarineMRKKIMALNKQKKLQYIEQILEEIKNGAIDDKEDSILIDVALDFINDLKEGSSDGGT*
Ga0098061_105444253300010151MarineMALNKQKKLQYIEQILEEIKNGSIDDKEDSILIDVALDFVEDLKEGKSDGGT*
Ga0098059_100635363300010153MarineMALNKQKKLQYIEQILEEIKNGSIDDKEDSILLEVALDFVGDIKEGGSDGGT*
Ga0098059_105277023300010153MarineMSLSKQKKLQYIEQVLEEVKNGHVDDKEDSILIDVALDFIEEIKKEGDMKK*
Ga0098059_120500513300010153MarineMSLNKQKKLQYIEQILEEVKNGSVDDKEDSILIEVALDFIEDLKEGS
Ga0098059_138570323300010153MarineMALNKQKKLQYIEQILEEIKNGAIDDKEDSILIDVALDFINDLKEGSSD
Ga0133547_1137583343300010883MarineMSLNKHKKLEYIEQILEEIKNGHVDDKEDSILIDVALDFIEDLKGLQETKDD*
Ga0163108_1037269623300012950SeawaterMALNKQKKLQYIEQILEEVKNGSIDDKEDSILIDVALDFINDLKEGSSDGGT*
Ga0164320_1034753333300013098Marine SedimentMRRRTMALNKQKKLDYIQQVLEEVKNGHVDDKEDSILIDVALDFIEDLKEGSSDGRT*
Ga0181432_101870243300017775SeawaterMGRKMALNKQKKLQYIEQILEEVKNGSVDDKEDSILIEVALDFIEDLKEGSSE
Ga0181432_124202913300017775SeawaterQYIEQILEEITNDNIDGKEDSILLEVALEFVEDLKEGSSDGTTGG
Ga0181432_125593323300017775SeawaterMALNKQKKLQYIEQILEEVKNGSIDDKEDSILVEVALEFINDLKEGSPNGGT
Ga0181432_128957333300017775SeawaterMALNKQKKLQYIEQILEEVKNGSVDDKEDSILIDVALDFVEDLKEGRSDGNT
Ga0211524_103128813300020291MarineMALNKQKKLQYIEQILEEVKNGSIDDKEDSVLIDVALDFINDLKEGSSDGGT
Ga0211660_1018511833300020373MarineMALNKQKKLQYIEQILEEIKNGAIDDKEDSILIDVALDFINDLKEGSSDGGT
Ga0211660_1022811023300020373MarineMALIKQKKLQYIEQVLEEVKNGHVDDKEDSVLIDVALDFINDLKEEVQKEN
Ga0211646_1007400823300020383MarineMALNKQKKLQYIEQILEEVKNGSIDDKEDSILIDVALDFVEDLKEGKSDGDT
Ga0211680_1008902123300020389MarineMALNKQKKLEYIEQILDNVKDGSIELDHNDSILIEVALDFIEDIKGGDSDGGT
Ga0211680_1021616923300020389MarineMALNKQKKLQYIEQILEEIKNGSIDDKEDSILIDVALDFVEDLKEGDSDEDT
Ga0211637_1000185333300020398MarineMALNKQKKLQYIEQILEEVKNGSVDDKEDSILIEVALDFIEDLKEGSSDGGT
Ga0211575_1013653223300020407MarineMALNKQKKLEYIEQILDNVKDGSIELDHNDSILLEVALDFVEDLKGGGSDEGGT
Ga0211525_1001245913300020423MarineMALNKQKKVEYIRQILDEIKNGNINGNEDSILVEVALDFIEDLTERSSDGGDA
Ga0211603_1019574533300020427MarineMALNKQKKLQYIKQILEEVMNGSINEQEDSILIEVALDFIEDLKEGSSDGGT
Ga0211670_1050987823300020434MarineMALNKQKKLQYIEQILEEVKNGSVDDKEDSILIEVALDFIEDLKEGSSDGG
Ga0211578_10000397133300020444MarineMALNKQKKIEYIRHVLEQVVNDSIDGKEDSILIEVALDFIEEIGKGGSDGGT
Ga0211578_1015338123300020444MarineMALNKQKKLQYIEQILEEVKNGSVDDKEDSILIEVALDFIEDLKEGNPDGRT
Ga0211578_1051784423300020444MarineMSLNKQKKLEYISHVLEQVVNDSIDGKEDSILIEVALDFIEDIKGGGSDGGT
Ga0211691_1006739943300020447MarineMALNKQKKLQYIEQILEEVKNGSVDDKEDSILIEVALDFIEDLKEGSPE
Ga0211697_1008762243300020458MarineMALNKQKKVEYIRQILEEVKNGNIDGNEDSILVEVALDFIEDLTKGGSDGGSA
Ga0206686_101916443300021065SeawaterMSLNKQKKIEYIRHVLEQVVNDCIDGKDDSILIEVALDFIEDIGGSDERPT
Ga0206684_109868123300021068SeawaterMALNKQKKLQYIEQILEEIKNGSIDDKEDSILIEVALDFIEDLKEGKSDGGT
Ga0206678_1019851943300021084SeawaterMALNKQKKLQYIEQILEEIKNGSIDDKEDSILIDVALDFVEDLKEEKSDGDT
Ga0206683_1034359123300021087SeawaterMSLNKQKKIEYIHHILEQVVNNSIDGKEDSILIEVALDFIEEIGKGGSDGGT
Ga0206679_1009680013300021089SeawaterMALNKQKKLQYIEQILEEIKNGSIDDKEDSILIDVALDFVEDLKEGKSDGGT
Ga0206679_1034259713300021089SeawaterYLLKIIVLRRRRKMALNKQKKLQYIEQILEEVKNGSVDAKEDSILIEVALEFINDLEEGSPNGGT
Ga0206680_1016242143300021352SeawaterMSLNKQKKLEYIEQILEEIKNGSIDDKEDSILIDVALDFIEDLKEGKSDGGT
Ga0206685_1000350743300021442SeawaterMALNKQKKLQYVEQILEEVKNGSVDDKEDSILIEVALDFIEDLKEGSSE
Ga0206685_1002418723300021442SeawaterMALNKQKKLEYIEQILEEIKNGSIDDKEDSILLEVALAFMDDLKYDILGIKKGGSDGGST
Ga0206685_1012009613300021442SeawaterMALNKQKKLQYIEQILEEVKNGSVDDKEDSILIEVALDFIEDLKEGSPDGGT
Ga0206685_1012762433300021442SeawaterMALNKQKKLEYIKQILEEITNDSIDGKEDSILIEVALDFIEDIKGGGSDGGSA
Ga0206685_1023120133300021442SeawaterMSLNKQKKLQYIEQILEEVKNGSVDAKEDSILIEVALEFINDLEEGSPNGGT
Ga0206681_1020561823300021443SeawaterMSLNKQKKLQYIEQILEEVKNGSIDDKEDSILIEVALEFINDLKEGSPDGGT
Ga0206681_1034585423300021443SeawaterMALNKQKKLQYIEQILEEVKNGSVDDKEDSILIEVALDFIEDLKEGNSDGGT
Ga0226832_1011490343300021791Hydrothermal Vent FluidsMSLNKQKKLEYIAQILDHVKDGSIELDHNDSILLEVALDFIEDLKEGQSDGNT
Ga0226832_1035208213300021791Hydrothermal Vent FluidsMALNKQKKLQYIEQILEEVKNGSIDDKEDSILIEVALDFIEDLK
(restricted) Ga0233433_1040792223300022931SeawaterMALNKQKKLQYIEQILEEIKNGSIDDKEDSILLEVALEFVGDIKEGSSDGGT
(restricted) Ga0233439_1003327043300024261SeawaterMAFNKQKKLEYIEQILKEIKSGSIEDSEDSILLELALDFLNDIKNEKD
Ga0207906_104293823300025052MarineMSLNKHKKLEYVKQILEEIANGSVDTKEDSILIEVALDFVEDLKERNSDGGT
Ga0207887_108689923300025069MarineMALNKQKKLQYIEQILDEVKNGTIDGDEDSILVEVALEFINDIKEGSPDGGT
Ga0209349_110106223300025112MarineMSLNKQKKLQYIEQILEEVKNGTVDDKEDSILIDVALDFIEEIKKEGDMKK
Ga0208894_103690923300026200MarineMKRRTTMALNKQKKLQYIEQILEEVKNGTVDDKEDSILIDVALDFIEEIKKEGDMKK
Ga0207989_107005213300026209MarineTMALNKQKKLQYIEQILEEVKNGTVDDKEDSILIDVALDFIEEIKKEGDMKK
Ga0208408_115650523300026260MarineMALNKQKKLQYIEQILEEVKNGTVDDKEDSILIDVALDFIEEIKKEGDMKK
Ga0209019_112578133300027677MarineMALNKQKKLQYIEQILEEVKNDNIDGKEDSILIEVALDFIDDLKEGKSNENT
Ga0209752_110002023300027699MarineMALNKQKKLQYIEQILEEVKNGSVDDKEDSILIEVALDFIEDLKEGSSE
Ga0257121_122375813300028198MarineMALNKQKKLDYIQQVLEEVKNGHVDDKEDSILIDVALDFINDLKE
Ga0257111_125425513300028535MarineMALNKQKKLEYVKQILEEIANGSVDTKEDSILIEVALDFVED
Ga0308017_104869133300031689MarineMALNKQKKLQYIEQILEEIKNGHIDDKEDSVLIDVALDFIEDLKGLQETKDD
Ga0315328_10008105103300031757SeawaterMALNKQKKLQYIEQILEEIKNGSIDDKEDSILIDVALDFVED
Ga0315328_1032334023300031757SeawaterMSLNKQKKLEYIEQILEEIKNGSIDDKEDSILLEVALAFMDDLKYDILGIKKGGSDGGST
Ga0315328_1041922223300031757SeawaterMALNKQKKLQYIEQILEEVKNGSIEGGEDSILIEVALDFVDDIKEGDIKN
Ga0315328_1082757823300031757SeawaterMALNKQKKLQYIEQILEEIKNGSIDDKEDSILLEVALDFVEDLKEGNSDGGT
Ga0315332_1023038643300031773SeawaterMALNKQKKLQYIEQILEEIKNGSIDDKEDSILLEVALDFVGDLKEGSSDGGT
Ga0310121_1018914913300031801MarineMALNKQKKLEYIEQILEEVKNGNIDGNEDSILVEVALDF
Ga0315319_1026492433300031861SeawaterMALNKQKKLEYIAQILDHVKDGSIELDHNDSILLEVALDFVEDLKGGDSDG
Ga0315319_1050507023300031861SeawaterMALNKQKKLQYIEQILEEIKNGSIDDKEDSILLEVALEFMDDLKYDILGIKKGGSDGGST
Ga0315319_1051080923300031861SeawaterMALNKHKKIEYIRHVLEQVVNDSIDGKDDLILIEVALDFIEDIKGGDSDGGTN
Ga0315318_1027263413300031886SeawaterMALNKQKKLQYIEQILEEIKNGSIDDKEDSILIDVALDFVEDLKEGKSDG
Ga0315318_1080370113300031886SeawaterMALNKQKKLQYIEQILEEIKNGSIDDKEDSILIDVALDFVEDLKEGKSDGDT
Ga0315329_1018234013300032048SeawaterMALNKQKKLQYIEQILEEVKNGSVDDKEDSILIEVALDFIEDLKEGKSDGGT
Ga0315329_1036178523300032048SeawaterMALNKQKKLQYIDKILEEIKNGSIDDKEDSILIDVALDFVGDLKEGKSDGDT
Ga0315333_1017719113300032130SeawaterMALNKQKKLQYIEQILEEIKNGSIDDKEDSILIDVALDFVEDLKEG
Ga0315333_1048343713300032130SeawaterMALNKQKKLQYIEQILEEIKNGSIDDKEDSILIDVALDFVEDLKE
Ga0310345_10000539113300032278SeawaterMALNKQKKLEYIEQILEEVQNGSVDSKEDSILIEVALEFVNDIKEGSLDEGT
Ga0310345_10004964113300032278SeawaterMALNKQKKLQYIEQILEEVKNGSVDDKEDSILIEVALDFIEDLKEGNPDGGT
Ga0310345_1001533963300032278SeawaterMALNKHKKIEYIRHVLEQVVNDSIDSKDDLILIEVALDFIEDIKEEPSGGNN
Ga0310345_1007387353300032278SeawaterMALNKQKKLQYIEQILEEVKNGSIDDKEDSILIDVALDFVEDLKEGKSDGGT
Ga0310345_1008459043300032278SeawaterMALNKQKKLEYIQQILEEVVNDSIDGKEDSILIEVALDFIEDIKGGSDGGST
Ga0310345_1014974833300032278SeawaterMALNKQKKLEYIEQILEEVKNGSVDDKEDSILLEVALDFIEDLKEGNSDGTTGG
Ga0310345_1059530443300032278SeawaterMSLNKQKKLQYIEQILEEVKNGSVDDKEDSILIEVALDFIEDLKEGGSDGGGT
Ga0310345_1061541323300032278SeawaterMALDKQKKLQYIKQILEEVMNGSIEGGEDSILIEVALDFVDDIKN
Ga0310345_1084574223300032278SeawaterMSLNKHKKIEYIRHVLEQVVNDSIDGKDDSILIEVALDFIEDIKGGGSDGGDT
Ga0310345_1132259523300032278SeawaterMALNKQKKLEYIEQILEEVKNGSVDDKEDSILLEVALDFIEDLKEGSSDGGT
Ga0310345_1206455213300032278SeawaterHKKIEYIRHVLEQVVNDSIDSKDDLILIEVALDFIEDIKEGTSNGNSGG
Ga0315334_10010418113300032360SeawaterHKKIEYIRHVLEQVVNDSIDSKDDLILIEVALDFIEDIKEEPSGGNN
Ga0315334_1005666723300032360SeawaterMALNKQKKLQYIEQILEEIKNGSIDDKEDSILIDVALDFVEDLKEGNSDGGT
Ga0315334_1019996613300032360SeawaterMALNKQKKLQYIEQILEEIKNGSIDDKEDSILIDVALDFVEDLKEGSSDGGT
Ga0315334_1036340143300032360SeawaterALNKQKKLQYIEQILEEVKNGSVDDKEDSILIEVALDFIEDLKEGNPDGRT
Ga0315334_1151370733300032360SeawaterMALNKQKKLQYIEQILEEVKNGNIDGNEDSILVEVA
Ga0315334_1183470823300032360SeawaterMALNKQKKIEYIKQVLEEVANDSIDGKEDSILIEVALDFIAEIGEGGSDGGGT
Ga0310342_10136293413300032820SeawaterMSLNKHKKIEYIRHVLEQVVNDSIDGKDDSILIEVALDFIEDIKG
Ga0310342_10258821723300032820SeawaterMALNKQKKLEYIEQILEEVKNGSVDSKEDSILLEVAL


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