Scaffold Ga0306920_100057881

Overview

Basic Information

• Taxon OID: 3300032261
• Scaffold ID: Ga0306920_100057881
• Source Dataset Name: Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5648
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002177	Metagenome / Metatranscriptome	587	Y
F105641	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0306920_10005788111	F105641	AGAAGG	MTNPSPTTVNRTLQRLPNSSYRPREYLTEKEVDRLIE
Ga0306920_1000578816	F002177	GGAGG	MMQTEQLATQLPTRGRPIKFTPERIQQVRNLVERGKSREEIAELIGVTVGSLQVTCSRLGISLQRVVFGNGMGLLRRGGPHNGTSTYTASRRGGVPLPPISGQPQQNSQSGPVEQPETTTPHEERARTHEMDLATFALRMKYRGHERTRELPLTQDMIRQLAFEAQFRNMSIGEFVGELLTAMMKRDLFQHVLEPNSKQP