Scaffold Ga0316190_10120768

Overview

Basic Information

• Taxon OID: 3300032259
• Scaffold ID: Ga0316190_10120768
• Source Dataset Name: Coastal sediment microbial communities from Maine, United States - Eddy worm burrow 2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1833
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Spirochaetaceae → Alkalispirochaeta → Alkalispirochaeta odontotermitis (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Worm Burrow → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Maine
• Coordinates
  • Lat. (^o): 43.9948
  • Long. (^o): -69.6486
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048676	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316190_101207681	F048676	GGAG	MLFRYSRLCGTASDTVDAVKLGIPQGFKLLKFKMSEYLKNIVKVTLSK