Scaffold Ga0307471_100013822

Overview

Basic Information

• Taxon OID: 3300032180
• Scaffold ID: Ga0307471_100013822
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5580
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000512	Metagenome / Metatranscriptome	1064	Y
F000696	Metagenome / Metatranscriptome	931	Y
F000739	Metagenome / Metatranscriptome	913	Y
F006480	Metagenome / Metatranscriptome	372	Y
F070523	Metagenome / Metatranscriptome	123	Y
F072052	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307471_1000138221	F072052	N/A	EAALKGDRQLGEQIAQILSARRFDNEMRAQVVRLIDDRARQQVPSAARRVINDWTQATFTVHRGNAARADAVSARREVEPSAVQGPQSHGLPAGQAGVSSAAFSSRAAQTRPAEESHRNASRSDARRVDYRKLSDEQILDL
Ga0307471_1000138224	F006480	N/A	MRRILIGGILLVLCGAITAHSKPDPLVFVFLRVDRTQDVAILRPMIAPDIGVQLDSGPRELKRGTVLHCTTSIREHAAFVEGQIARISELWLDCGDHKFVVKGLDFSQRTK
Ga0307471_1000138225	F000512	N/A	MIQVLRETHDTPENVAHRLARAGGINRFGEPNYRAVWGWSRLAWIGGKFEDRDEHGTLLRERIELREEPKYPAVNRWHIERWLPPEAYGSPRQWYAQTIERENGISIPALGPYPSRGDYEHCFTLEGPRGEFIQLTPTVAEHVARAIECSRALPRTKTRAHLYEHAHRKEQQYESWAYNALDDAVPAFHKQPFVTVL
Ga0307471_1000138227	F000739	N/A	MTLIKIWLRGLLAAAISGGAGGILTGFAAVGIDPQHFNLQAGMGATMRIAAAAALINAVIGVAAYLQKSPLPQDGV
Ga0307471_1000138228	F070523	N/A	MKGTLNVKKEQISLLPDERVAIHAKLGSILKGGDPAEILLVTILLLALRPPSRRKAPKKKAQPRRLP
Ga0307471_1000138229	F000696	AGGA	MPVVGSSAYNTAGQITSLVRSLLNDSQGNLFTDTILLPYANSAYRKVQRSLGNAGGGGFIQDDVLLIVPAVAQTDTSLQVSITDATAPPNQLPTDLLVPLKIWERRNTSTDDFLEMVDLTRHGGLPSRVQDVTLSVWEWRADGLYFLGATQDTQIRLRYLKAYPDFTDATSPVLIRNAQEAIAYAAAAMAAWARGSPLAEKWDDAASDAIEDLVSAAVRREQQSARRRRPFSARCGYTPF