Scaffold Ga0315268_10309159

Overview

Basic Information

• Taxon OID: 3300032173
• Scaffold ID: Ga0315268_10309159
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1532
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5106
  • Long. (^o): -110.3566
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004232	Metagenome / Metatranscriptome	447	Y
F013755	Metagenome / Metatranscriptome	268	Y
F016253	Metagenome / Metatranscriptome	248	Y
F016961	Metagenome / Metatranscriptome	243	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315268_103091591	F016961	N/A	GTWMRDPMNTALTIMGMAVLLPLCVIAGIYVGHSLTIKSQQTKTNEQNNRSL
Ga0315268_103091592	F004232	N/A	MNKTIVACDPGVNGGFAIHTKDGILLFAMPESLPDMAQLLSGFKVADSHLWIEKVPKFVSKLTPAAAMATLHENYGIIQGLAYAQGYALHRVEPKIWQEPLGLGGRKACATGPEWKRKLKSKAQELYPHLDVTLKNCDALLILHYALGGGR
Ga0315268_103091593	F016253	GGAGG	MSDKIKSFIDCGTGVYSISRKEAGEIHKAAKKVKNYAFSYWTRNRKAKEAK
Ga0315268_103091596	F013755	AGGAGG	VSNHIGDTNKMVSDTPISDSTPHNVADLAMACRRFERFAAGRQAYIQQLETENDALRADLLLWNEK