Scaffold Ga0315268_10185770

Overview

Basic Information

• Taxon OID: 3300032173
• Scaffold ID: Ga0315268_10185770
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1984
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5106
  • Long. (^o): -110.3566
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001259	Metagenome / Metatranscriptome	735	Y
F013755	Metagenome / Metatranscriptome	268	Y
F064717	Metagenome / Metatranscriptome	128	N
F088293	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315268_101857701	F088293	N/A	RILDLPAFADYNDRRQLRAIALDVRKLEDRVKQLEEENDAMRADLLLWREDKWRE
Ga0315268_101857704	F013755	AGGAGG	VNHIGDSNKKVSDTPISDSTAHNMGDLGMLCRMLERLAAVRLAYIKQLEAENDALRADLLLWNEKEVKL
Ga0315268_101857707	F001259	AGGAGG	MKDSSAFIYVHAFNGLVRVESIDTAKHIDGNPEWKHVATINPHVVLESILRATIKDRNLIIKHLLT
Ga0315268_101857708	F064717	N/A	MSILKQLGLTKESMAKMLGPVTAFKDPDPKIPRRWEAVPEEIKEAILNEHSTFTCRELGKKYGISSSCAWNIRNKKNKQTTKQ