Scaffold Ga0315268_10106853

Overview

Basic Information

• Taxon OID: 3300032173
• Scaffold ID: Ga0315268_10106853
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2640
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5106
  • Long. (^o): -110.3566
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012433	Metagenome / Metatranscriptome	280	N
F019102	Metagenome	231	Y
F045612	Metagenome	152	Y
F073252	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315268_101068531	F073252	N/A	GEELVPFSGVFKTPTSITYVARADTTARADFDAKFYDILEQLYRDPDLASYLTDHSNITFYVAKVTGDNPAVIGQNRTWSRAMTLDITATAKK
Ga0315268_101068533	F045612	GAGG	MSSLKWLEAEGYIEKFYDSNGDLCVRVCEGAEDCEV
Ga0315268_101068534	F012433	AGAAG	MSADQVAELQERLSVVREAIARIEERQQSIISVIERHTSELAQWTAKINGKVDTLERESHTIKTKLWLVALVSGAVFSTIWELIKVRVFSR
Ga0315268_101068537	F019102	N/A	MSISLDEELNSAFIAPEKEYMGEKLAPYTEGSRLLLLQVRDDNDSSIYFIWSFIYMHIQIAKGRKEAIKLAWNRDLFREKIMDFIEGKTEADRDAATQIVSNILDEAQKGKVEAIPAPHQAELGNA