Scaffold Ga0315281_10000008

Overview

Basic Information

• Taxon OID: 3300032163
• Scaffold ID: Ga0315281_10000008
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 324952
• Total Scaffold Genes: 352
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 255 (72.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5099
  • Long. (^o): -110.3581
  • Depth (m): 87

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003098	Metagenome / Metatranscriptome	507	Y
F009011	Metagenome	324	Y
F032903	Metagenome	178	Y
F089857	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315281_10000008139	F032903	GAGG	VVFFRMVHEAVCSERRFLIPDAKVDDVASVCHKAFKEMGLRIMESEKTRDGSTTVLAGEGALVPLTLRTLLYPFSLQQYVKAAQRSGVHVVLSSSEGDVILYSCGLVLDELTGKPAEHVSDEDVEDVTGTLEALDFESKFIKKIKAIFPKTKETE
Ga0315281_10000008273	F009011	GAG	LVSLTDWAAVISAVTGVSAAVFILLQLRHMEQHRNMEISMKLFEWAESDRLRKAFRWVEEKFQFEDYAKFSAQEKTDVEVGDYPYEVTAFFEQVGFMVAKKFVDLDVIVDRLGNYVVSNWKKLEPWILALRKEKSDAAFGEHFRKLYGKAVEYLRESHGCTSSVEDSLTQVAR
Ga0315281_10000008347	F003098	N/A	MKFVFEFPPIHGVFDTGYGVVYVFGGLHESEIENILVHETLHYVLLKVAGKKASLRLDRIYAQLDEESDC
Ga0315281_1000000871	F089857	AGGAG	MGPDEKYGKRRQITFRIGPLCQERLARAAALFNLKSCEYVKAILYRDLAIFDEPLDQRRSAWKKQQRQRLEDERGQDEGEL