Scaffold Ga0272424_1002025

Overview

Basic Information

• Taxon OID: 3300032162
• Scaffold ID: Ga0272424_1002025
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37096
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (25.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004755	Metagenome	424	Y
F009377	Metagenome	318	Y
F028367	Metagenome	191	Y
F048017	Metagenome	148	Y
F052973	Metagenome	141	Y
F080688	Metagenome	114	Y
F091080	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272424_100202514	F009377	N/A	MTRSTELESKSVRIARYKLRNAERKSLLPQNQTASEEEDTNASLNIKEENTNALLFNYEIIKISISTELNAXISTHEADDLVAFIKYICQQHDIEIKTHNDMIQMLNDINKINIELKAINIKLKATQVMLNAVXMRLQKEMKKKNVIIRHLEVTSSQLSTSISKDXFSKMIKLSDSLLFKDSRQNVNNXLFXMQNKLKMNKNHFSIKEMKIAYVKSRVSKTMIKHIAFRMRNMITNLFLKAEKILLIINKMYNDLNXRYTTQRQFLKLYQNKIFFHEFXMKFQRLSAKLKYNNETLLDDLQHKISSDLQRVMINERTMNLNEFIDICMQVNV
Ga0272424_100202516	F091080	N/A	LCXFKXVINKFIILFLCSYIMIDVYRAHVINFXSKILLYNXIDFDFDNNIDXISKHSHSFDIKDSSMKVMSMTSIFIRVRNLNIFSKLLKMISTVNDLKLNESSNMLMKQNISILLLITTLMKVDHFLNLQXSYALELFQDIYMFYVLSFCIXSKVLSSITFSCXNQDSIF
Ga0272424_100202519	F052973	N/A	MFKDCVRLERNVFVTEKECDVNEQDVDKRKECXERKKDXVISESNLS
Ga0272424_100202527	F080688	N/A	MLQTLMTQAKMHXTTHSDVHXSLDFKNLHEKQIVESMTSQLSEHSIKVQLSDHL
Ga0272424_100202528	F048017	N/A	MNISESAQRLENHFQTILILDKVDVLFIESKANLYQXVXMINQTNEFCSEYRQAINENKLKFHITKLKNCEIIDDVLFRKDLLXISENMHMKLLQEVHDQSSIVHFDNKQIIDLVQRFYYXSDH
Ga0272424_10020257	F028367	N/A	LLQFQFEFRFKKLVISSKVIEEIEIISLCKLDEILLKENYFEKSFLIDAYLIFQNXSFSLRSLIDSDSVIYMIIHSNLVNKVCEKLKIQPISLVKEKLIRDYDEKIFKKIITHKILFNLIIKSHKKLTVSMLIADINHHEVILSKFXMNKNEILLNMQNDVIVFSNQLNTSISIFSIFFNSKHLSXSXSTSSSLITQTKIFMMLK
Ga0272424_10020258	F004755	GAG	LSYVHSRLFNDAAEIIQAKCERNYVNFYKIINDLLKELAQLFNDSNKKVNFHRKYYNLVQKFKKFSEFYTQFQRLSFYLDYHEKQLIVDLKDKINSCFRFIXVNQLVQFNFLKEIHFYLIHLNNDQRVIQEIKNKLKRVNDLSKTIFHKVTVITSSVNHLKSDQLKSCNAILTNVKEADILVESCFICHKSDHSSKECFNRLTRINAVNNEYDCFNFNSNFDSKN