Scaffold Ga0311301_10351304

Overview

Basic Information

• Taxon OID: 3300032160
• Scaffold ID: Ga0311301_10351304
• Source Dataset Name: Sb_50d combined assembly (MetaSPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2306
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060018	Metagenome / Metatranscriptome	133	Y
F060263	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311301_103513041	F060263	N/A	GDQAIVEISDLRFPRARPGRPASFTYRVTFAPGGSVLSKGWVTQ
Ga0311301_103513046	F060018	N/A	TAMRIVLAILLVILPQASESERHRLDLEPLLRDPVALQKLTVVYLPPSHKGWFQQFFVRGDGSLILQSHPDRPMALTDIPTCRARVSQEVVRDLLRLIIQRHFFDLPERQFIFLYAAQGDEKLELHTIMVNDGQAKTSRTFGIGEFAGKEEKIPADFAAVEDELKRLKDSAFPPDGKPCHFAPAVKF