Scaffold Ga0315295_12200696

Overview

Basic Information

• Taxon OID: 3300032156
• Scaffold ID: Ga0315295_12200696
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_0
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 513
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5367
  • Long. (^o): -110.4246
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F079934	Metagenome	115	Y
F081076	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315295_122006961	F079934	AGGAG	MHNKQELRIKKAHIALMKHPETALYSGVLLMGVSEVVE
Ga0315295_122006962	F081076	N/A	TLVDVKDIIKDPEGVKVPDEISAQLMIMFQAIDVVETQDEVTKFMKFVNKIPSSEVQAVFFTMMMRNTKTIKLARNNMQIAEWAKNNHELF