Scaffold Ga0315295_10040603

Overview

Basic Information

• Taxon OID: 3300032156
• Scaffold ID: Ga0315295_10040603
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_0
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4311
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5367
  • Long. (^o): -110.4246
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F013279	Metagenome / Metatranscriptome	272	Y
F014590	Metagenome	261	Y
F066578	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315295_100406031	F066578	N/A	FDLMDVPEPVWEVGWMPATTEFARNHKMEKLVGYLPLDEAVQL
Ga0315295_100406032	F013279	N/A	MKYDYKCPQCDSKLTIERSIYEDAKDPGCFDCHLPMSRVYDAPAIQFKGRGFYSNDK
Ga0315295_100406035	F014590	GGAGG	VRTRHLRLVSSTPSDTTIAKSNVDSPYGPVRAGLTTSQTTSDQQLTELLSSLENVVANLNYKSFEVYDTLNIAIEAVSVALSNTQTEGAGTDADRS
Ga0315295_100406038	F000821	GGAGG	MNEEYLKAKFDLCISEAEKDLQQEEIARAIKNLQRANLALSRIFNLEEGESE