Scaffold Ga0315910_10017370

Overview

Basic Information

• Taxon OID: 3300032144
• Scaffold ID: Ga0315910_10017370
• Source Dataset Name: Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5393
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.0136
  • Long. (^o): -118.4673
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005073	Metagenome / Metatranscriptome	413	Y
F028452	Metagenome / Metatranscriptome	191	Y
F063445	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315910_1001737010	F005073	N/A	MDDSLFIVFIGAAVAGLIGLFLYGWMRRNEKPPPGVKPLKDEDDWK
Ga0315910_100173704	F063445	GAG	MHIGMQGALWGLALGVILLLIEYTVVKKAVAERAVQKHQKPQFDAQDRARVKAVLSFAVFLPPAFALGAWLIWG
Ga0315910_100173708	F028452	N/A	MEKIQVGKDECPVAPPPRVTVYTRVLHRACQILGGADQLAAHLRVSVLVVHKWLEGEDVPPSNIFLNAVDLVLPTWGPEDDALARAVSASRPKNN