Scaffold Ga0315910_10000302

Overview

Basic Information

• Taxon OID: 3300032144
• Scaffold ID: Ga0315910_10000302
• Source Dataset Name: Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 52778
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (23.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.0136
  • Long. (^o): -118.4673
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010546	Metagenome / Metatranscriptome	302	Y
F028948	Metagenome / Metatranscriptome	190	Y
F061932	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315910_1000030216	F010546	N/A	MDPIPINFKHNGVTYKDCYFTKINRGDENSFWHLYDNDNYYLGKLRFTDQWTFDADKRKTGIDQLAEFFGEFVEKANRNNAA
Ga0315910_1000030219	F028948	N/A	MEKSQEFLKREFIKLVSDTLALLGAERRLVEDIKASKDNPFSARIIDEIKRYNGEQEDKTKHTVALLNTTFSVNKY
Ga0315910_1000030242	F061932	N/A	MLTGMLLRKKGEIKILTAVLIASSLLLIGGILILIK