Scaffold Ga0315910_10000040

Overview

Basic Information

• Taxon OID: 3300032144
• Scaffold ID: Ga0315910_10000040
• Source Dataset Name: Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 229822
• Total Scaffold Genes: 226
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (22.12%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.0136
  • Long. (^o): -118.4673
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006921	Metagenome / Metatranscriptome	362	Y
F012202	Metagenome	282	Y
F013192	Metagenome / Metatranscriptome	273	Y
F014562	Metagenome / Metatranscriptome	262	Y
F015447	Metagenome	254	Y
F054991	Metagenome	139	Y
F068965	Metagenome	124	Y
F077426	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315910_1000004010	F015447	AGGA	MMDTEQNKNLDHIKFDPKYNLQMMFELLVEILALQQATNRVLNKKLFGEDAELVDHEIFKTTAELKPEIMESLYIAFGKTPSVKSKKSKPKSK
Ga0315910_10000040126	F068965	N/A	MQEKQRLITVVIVVVVYHLVDQFFFRSHRGLTVSSVAISIVLGMVVYLALIYFFGKKHLN
Ga0315910_10000040179	F013192	N/A	MFYKTIYKSVLFEQLTEQTRQFIKVLLRGEKYPGEYKNCKNTLEMTQKQLLLEEKRSNYNISISAPGKLSININKT
Ga0315910_10000040182	F014562	N/A	MKNIMPTLVVVSLLSLIAFISCSKENKLLERNTKLLIENKWVFERYGLDENNNGTIEETENNMLPCEADDTYAFFANGNGFYEGGPIPCSNGETTIINFNWRFENHCTELAVFASPEKINQLDENILEVYYMDVNSIGQAVKYIRRFKH
Ga0315910_10000040189	F012202	N/A	MEQFYIIARLKEMTMPELLDAIAEAHAGEAIDIYEYLEPGLIDKTTDTIWEFIEAVKSIRKE
Ga0315910_10000040197	F006921	AGG	MIFAFNRKPQKPFIMKISISSISCLLVGLVIISNLQAQSLKSLEENNGFKKYKLSSKFVLGLGVKHKDTDGADKIVIDYTKETIGDIPVKSIELYYLKDTLAKIIVNVSPEYYEKLIDACKNGFGQPTKDFSSNEKVKFDSTVATNYYKDNYIWKATRLRLEYYYLYPKITSGGYGTRTLYLTYVLNDYGQRVARVQKGANTAKNF
Ga0315910_10000040221	F054991	AGGA	MKRLLFLLPVLFFIKASAQVPYDFKKYRENNLSKDPLKKGPQKFRPLDKVMGKITWSDPNGTFILPLDKNMSETIELMQKLSKKQNIGVLVYTQPNGTKIYRLPQDHMFCLVPDMSQFNMPVFDRGTKIMGMPPGLLPPNEIIPKK
Ga0315910_1000004026	F077426	GGA	MRKIYFTVAAVLLIFSDCVKTSVRDDRNCDPNDPPIIKVISPKATPTLKPGDVLEIKAVFSDRDIVYVASWEALRAAGVCGNNPYSGQFEPKTDEFEMNVKFYVPANFAGDQIIRLYGVDGQGNISQLDILYKATN