Scaffold Ga0315910_10000003

Overview

Basic Information

• Taxon OID: 3300032144
• Scaffold ID: Ga0315910_10000003
• Source Dataset Name: Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1167230
• Total Scaffold Genes: 1182
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 810 (68.53%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.0136
  • Long. (^o): -118.4673
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056088	Metagenome / Metatranscriptome	138	Y
F085666	Metagenome / Metatranscriptome	111	Y
F102119	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315910_100000031002	F102119	GGCGG	MDFLRNLFGNLTSGIIRLLVTVGILAAAYFFLVKPVLNTTDKAIDSANKSFEKSFGTHGTNVTDISGTIDEVNKQIQREIRKSLKAAERHGNPQKLVKCIQRAHGDVQRIQRCTVKF
Ga0315910_1000000346	F085666	AGTAGG	VGQRASQLFPFGIAVVLPPAGLIIGLLNLQQGNRDLGTRLIVVSVLAAVVWALLFAA
Ga0315910_1000000360	F056088	AGTAG	VESLKINEGAVFKWVVIVAIAAVTVIALTLLTNQLVGALWFLALVIAGCVYGYRWAARKRRES