Scaffold Ga0315338_1003879

Overview

Basic Information

• Taxon OID: 3300032138
• Scaffold ID: Ga0315338_1003879
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - ASW #8
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12447
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.6953
  • Long. (^o): -122.3565
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030886	Metagenome	184	Y
F053548	Metagenome	141	Y
F053549	Metagenome	141	Y
F101902	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315338_100387922	F030886	AGGA	MSYHDQDPGYSKTGIAVVNPLIRIERKLKKVQKVLDNISDASILTANDLKIKIQKVLDGD
Ga0315338_100387927	F053549	N/A	MKVGDLVKWMNVLNDDMDRYREELGLVVKMSKTGHNTESAQVLFNDGETWWVDIQRLVVINESR
Ga0315338_100387929	F053548	N/A	MKDSGAPSIGDLVVALYDVERDISCAGLVTETKGIECKILWSSENNPAGWWPRISLKVISPSGRTTKV
Ga0315338_100387931	F101902	GGAGG	VKVGNLVKRRDDHAHHGIVVEVGPQETAIDHGNHVVRVQWADGDLTYEFIKMLEVLSEGG