Scaffold Ga0315336_1010824

Overview

Basic Information

• Taxon OID: 3300032132
• Scaffold ID: Ga0315336_1010824
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - ASW #5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7570
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7507
  • Long. (^o): -122.0138
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002744	Metagenome / Metatranscriptome	533	Y
F027534	Metagenome / Metatranscriptome	194	N
F089041	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315336_10108241	F027534	GAGG	MTYGYDDVTTTSLGTGVAETQLNGGTSLSAPDPAHGFLACIPYQSESAAFTVDESLLTAFRIQSDDVAVEPKKFVLPNVNTGDASFTSVAAPALLAYPINTPLAGGEHLNFYGQPLVANTVAPICGAPVIY
Ga0315336_101082415	F002744	N/A	FTSVAAPALLAYPINTPLAGGEHLNFYGQPLVANTVAPICGATVIYDTDGTNDAESYYTRPTNESAAATAVDTRTEGGSMTIQGGNEIRGLYTVVSGGTATASQHDVGYSEFLSPDFNTSMPYRVAIQPTYTGLGSNANAVTGGGGLMQYNMPRGKGIPLANNVTITNYYTNRDARTGASNFINFVRYTKN
Ga0315336_10108243	F089041	AGGA	MPEELATKIRNGQIRINSQEKLHKTFNLNISEFALLEQLKTKWHFSDYSETVLYCIWLASVSDGIETV