Scaffold Ga0315903_10121916

Overview

Basic Information

• Taxon OID: 3300032116
• Scaffold ID: Ga0315903_10121916
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2445
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F013414	Metagenome / Metatranscriptome	271	Y
F059952	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315903_101219161	F059952	N/A	GQYYADKQFAEMSGDEFIYAEFNKFYNLKEGDEDYLC
Ga0315903_1012191611	F013414	AGGCGG	MSKTREIKVAEDLVNLTEDHWFNPAILARYLTDQPFYTVDRIMELVAQIIRWQANRHNDELNTEDGIYNSGQSSEGLFLANELNETLNRLIKTYKWENIKLPVDPAKFIKKMPKVETQSYRHSWLHDTDTRTHVT
Ga0315903_101219165	F000263	AGGAG	MMTPEDIGLPPHLQRMVNAGVSGLDIMHGELKNLMLIAEQDLASALEQETLSEEAMDSMVRTECEGRLDMLVELYNLTYQLSFAIGARNV