Scaffold Ga0315903_10084814

Overview

Basic Information

• Taxon OID: 3300032116
• Scaffold ID: Ga0315903_10084814
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3075
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.7464
  • Long. (^o): -83.3444
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000645	Metagenome / Metatranscriptome	962	Y
F059096	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315903_100848146	F000645	GGAG	MSNYLDDYVSVQDRLKEYINEYPDYRIKTHVLEESLTSNCDVYIVKTELYRTEADSVAWTTGLSSEAKSKQYALELAETGSLGRALNLAGYFAKPAGGPKKPIQTVNPKLAEFVKEQRPNDPEPIVWDVTAIAEELGAEVVDELPLCSEGCGPMILKQGTKEGKEYRGYVCPRPKSGHPAKWMRIGSDGKWVFQK
Ga0315903_100848147	F059096	N/A	RYGQMKDGTWHLKAQTPAVWKVQSETPIRKAQVRFYCQPCADEVQNWPDGTFWSLKEQLEMAIDEFAGREKLNVELP