NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315902_10308814

Scaffold Ga0315902_10308814


Overview

Basic Information
Taxon OID3300032093 Open in IMG/M
Scaffold IDGa0315902_10308814 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1490
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014590Metagenome261Y
F066578Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0315902_103088145F014590GAGGVRTKHLSLVTQEHSDTPSVKSNVSSPFGPVRAGLTTSQTTPNQQLSELLNSLESVVESLNYKSFTVYDTLNTAIQGVRAALSDIATDETGIET
Ga0315902_103088146F066578N/ASFDLMDLPEPVWFNHQMPASTEFDRVDKVDKLVGYLPIEEAVQL

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