NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315902_10040557

Scaffold Ga0315902_10040557


Overview

Basic Information
Taxon OID3300032093 Open in IMG/M
Scaffold IDGa0315902_10040557 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5470
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (6.25%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025505Metagenome / Metatranscriptome201N
F033801Metagenome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0315902_1004055713F033801N/AMKYEIKWKSGRIITDAASVEEAIKKFKELGIDVPEKEISIASFQ
Ga0315902_100405572F025505N/AMIANRVEEKIQDVQLVIDNRDKRIMKIGAKEAIPKITQVLYQLLPVYGIEAKEEHLLELTEFISTYKLISVDEIRLAFEKFAKQELDINDHKLYGKVDLHAIGRILTAYINWRQKIYFAMDSDIQAKKEEEDRLNRLGKVAEEYDKDFDNKLKNFQSPYLEDIPIFWFDICVKRGYIVWEDGEKEKLWEEAKELALKIKPDSDNLIDRKNHLRKIEEGNIPRAKALAFKLAVWRKVLLRD

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