Scaffold Ga0315905_10141737

Overview

Basic Information

• Taxon OID: 3300032092
• Scaffold ID: Ga0315905_10141737
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2400
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011756	Metagenome / Metatranscriptome	287	Y
F018703	Metagenome	233	Y
F022400	Metagenome	214	Y
F072283	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_101417371	F072283	AGG	MQTMQDLIDLIKPILPKALIIDTDDGILIETGLELGLGGLLQTIEREGA
Ga0315905_101417376	F011756	GAG	MVYARLLPIDLRELMSEPRYLEGDEFALSGGYEELINCKECAVEYDRTEYQSDTCSDCEDKSIARERGSK
Ga0315905_101417378	F018703	AGGTGG	LSKTERRIETAKAQAVRQRNYRRARDRALARLGNDYPNVYRTYLEEEIEADEKMGKKWLDITGNTKSANGRSR
Ga0315905_101417379	F022400	AGG	MKRTTTRSSQRTTLRLVGTGEEESGSASSPFGPVKAGLIISQITKEVAQLTELLNSLERKIAEANTKSLEVLNTYLNDTEHPVRHIASSSNTDTTDSI