Scaffold Ga0315905_10019873

Overview

Basic Information

• Taxon OID: 3300032092
• Scaffold ID: Ga0315905_10019873
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6801
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000763	Metagenome / Metatranscriptome	901	Y
F015090	Metagenome / Metatranscriptome	257	Y
F048958	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_100198731	F048958	GAG	MARKKVIDLDTYNALDTWAIGLQEMYRALRRAGFDVELSLAII
Ga0315905_1001987313	F015090	N/A	NSVIVSPDDPYLTPNNNQHITISPTANFKIIMTVPLFDNEGNLNGIEDTVCGVFAKLAASSLVYNVSAISAPSILNAASGDLLSCEMSVSILTSWS
Ga0315905_100198733	F000763	AGGCGG	MKHPAYLAAGAFLAAWASSNFEADYRAILWAVLSGIFGYASPKK