NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315905_10019873

Scaffold Ga0315905_10019873


Overview

Basic Information
Taxon OID3300032092 Open in IMG/M
Scaffold IDGa0315905_10019873 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6801
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000763Metagenome / Metatranscriptome901Y
F015090Metagenome / Metatranscriptome257Y
F048958Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0315905_100198731F048958GAGMARKKVIDLDTYNALDTWAIGLQEMYRALRRAGFDVELSLAII
Ga0315905_1001987313F015090N/ANSVIVSPDDPYLTPNNNQHITISPTANFKIIMTVPLFDNEGNLNGIEDTVCGVFAKLAASSLVYNVSAISAPSILNAASGDLLSCEMSVSILTSWS
Ga0315905_100198733F000763AGGCGGMKHPAYLAAGAFLAAWASSNFEADYRAILWAVLSGIFGYASPKK

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