Scaffold Ga0315905_10019795

Overview

Basic Information

• Taxon OID: 3300032092
• Scaffold ID: Ga0315905_10019795
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6815
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (72.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001507	Metagenome / Metatranscriptome	681	Y
F010684	Metagenome / Metatranscriptome	300	Y
F061860	Metagenome / Metatranscriptome	131	Y
F063708	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_1001979510	F063708	N/A	MDLNTLIEYMKLHLISLEQDLEENPCSIHVVDIEGQIYATKHLLSVAEGMIE
Ga0315905_1001979513	F001507	AGG	MTQTYKPYTISELVMEIYEDNLSHFEFEENMGGEPCDCHLHITMETIVKYWGE
Ga0315905_100197955	F010684	GAG	MPEFKVEIIFEPTGDYMTFRYEAESDNEADLCNEILNQLSIVSFKEKD
Ga0315905_100197959	F061860	GAGG	MNNLTLEPRLQALVDMGESGTDILHGELKNMMYECEKELIPLLENSNEVGSDEDYEDTVQRLYNEGYMDGLVAAYQLTYELAFAIDERRKNGNV