Scaffold Ga0315905_10011250

Overview

Basic Information

• Taxon OID: 3300032092
• Scaffold ID: Ga0315905_10011250
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9076
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (100.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003212	Metagenome / Metatranscriptome	500	Y
F005558	Metagenome	396	Y
F013279	Metagenome / Metatranscriptome	272	Y
F014116	Metagenome / Metatranscriptome	265	Y
F018135	Metagenome	236	Y
F026830	Metagenome / Metatranscriptome	196	Y
F027417	Metagenome	194	Y
F033321	Metagenome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_100112501	F014116	AGGAG	VADNSADIAKRIILGAVAEGMTVEAATASAGKSIKTYEYYRRSDKIFADKIDRTRLGLK
Ga0315905_1001125010	F027417	GAGG	MSYDYRVTFVTDYLNITTNVCLELDETTGNCSDEAYEQATINGMNNIEDEIGKIDETIINDITVTLLLDDEEIELNEG
Ga0315905_1001125011	F003212	AGGAG	MKDKWLVTLEIDTYDGNPAKWDWKAIFTGDDDITIIESEYKGRVLPTSEGESND
Ga0315905_1001125013	F005558	GGAG	MNDAISWSELAELTHATQVERFNFCMCEDLEPHEYPYPDCVKELA
Ga0315905_1001125019	F013279	AGGA	MQYDYRCPDCNAVLTVERSIHEEPREPTCFVCHISMVRKWDSPGVTFKGKGFYSTGG
Ga0315905_1001125025	F026830	AGGAG	MPVPEGNITTSEILVPVVEEVVETSTTEEVEETDDN
Ga0315905_100112504	F033321	GGTGG	MSELEILRAEYERAANNPLFDKPADYCILLNLIQDRIDEIEERYANF
Ga0315905_100112507	F018135	AGG	MMTVERVRHSGAVIVSQFIGEGAGEYLFSRTYYGYTIKQAKAQFKIALEGEGK