Scaffold Ga0315905_10008526

Overview

Basic Information

• Taxon OID: 3300032092
• Scaffold ID: Ga0315905_10008526
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10371
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (3.70%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F005529	Metagenome / Metatranscriptome	397	Y
F008073	Metagenome	339	Y
F024318	Metagenome	206	Y
F034898	Metagenome / Metatranscriptome	173	Y
F047062	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_1000852614	F024318	N/A	MKHYLYLGKFIKTPGDLAPKGVRSTYQTEKLTFEETFKRIWELVNTNR
Ga0315905_1000852618	F047062	N/A	MNYDSENFFDQEITFTYEGKDYLWIGDYTIEHFGEDESEYAPAYGEMEICIDHTSSLICYEEGKEVIPTRSMIMELEIEIERNY
Ga0315905_100085262	F005529	N/A	MARGLPKSPLDYSLEIRYRLSNGEWSMWMNKGKGSFQSIEIVQRQIRLLAASYYGHEKEIRFEWNGWLCDFAGLPTGEVIALK
Ga0315905_1000852624	F001775	N/A	MNFTTDNQKIHIAILAFLAGLILAFIVFPRPEVETVYKFETQVETDTIYTRVVDTIYVPKTKIKTEVLRDTILKDYKPKISLFKTSIPSEYGSTHVSGEVLGEVLKMTATNDFKIPVVTNTIKNTETKTIVQKPKGIYLGAGVNSLLDPLAKVSYLDNKYLFTYQYQPVTKIHTLGVSKKLF
Ga0315905_100085266	F008073	N/A	MRQIILKHLQKMEFVCGLKQFKEYKESDAIELVECIHTLFRSYGWMNESRVDYILHAGMRGQYGDFYHVNEKNVSGWINQYYAHHQSQIVQEVQAMNNKDREPTEEEIAQWIEIGKQIFKDNYQSAKESGFCKDLAEWGGNWFNKFQEKGILKPWEYPVEDIEKDVRRELRISTRYIDEVTVGAKSKNKIWKLFILESIKENRNLDKLI
Ga0315905_100085268	F034898	N/A	MTRAEIITELNHRTTQKYLVYLALQEIMLDYYEDVSMLKFFDLDLQTKHKNMINALKKKSTQAYRYLEGYENGEATIKQFHEFVTLFEKLHKAIDLGGAIFHDCLNAVEDVLDSNEKKES