Scaffold Ga0315905_10006028

Overview

Basic Information

• Taxon OID: 3300032092
• Scaffold ID: Ga0315905_10006028
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12329
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (18.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F075718	Metagenome	118	Y
F088308	Metagenome	109	N
F095001	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_1000602817	F075718	N/A	MRAYEINTTAFNEENLIIFTDLTISQIKKVIEPIVQSEREDGEYYDNDVLLDALADEYPKNQVYNFNPILITI
Ga0315905_1000602819	F088308	N/A	MKTLLIALLLWGCNDKVVIENAGDVEGRKTYHVKVGDKTYEYMYAEEIAHALTTGDWVYNEDLK
Ga0315905_1000602821	F095001	N/A	MKVKVDMRSIYGTYFTQVKEFKDNNHLENWLKWMDSNQDRVKVIGTSEVNKVNT