Metagenome Family F088308

Overview

Basic Information

• Family ID: F088308
• Family Type: Metagenome
• Number of Sequences: 109
• Average Sequence Length: 63 residues
• Representative Sequence: MKTLLIALCLWGCTDKIKIQNAGDVEGRKTYHVKVGKITYEYMYAEEIANGLKTGDWLYNEDLKLNK
• Number of Associated Samples: 65
• Number of Associated Scaffolds: 109

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 18.35 %
• % of genes near scaffold ends (potentially truncated): 36.70 %
• % of genes from short scaffolds (< 2000 bps): 67.89 %
• Associated GOLD sequencing projects: 59
• AlphaFold2 3D model prediction: No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (55.963 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (38.532 % of family members)
• Environment Ontology (ENVO): Unclassified (53.211 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline) (59.633 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: Yes
• Secondary Structure distribution:
  α-helix: 23.88%
  β-sheet: 26.87%
  Coil/Unstructured: 49.25%

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF03118	RNA_pol_A_CTD	4.59
PF00145	DNA_methylase	3.67
PF00118	Cpn60_TCP1	1.83
PF08800	VirE_N	1.83
PF04404	ERF	1.83
PF01510	Amidase_2	1.83
PF07460	NUMOD3	0.92
PF12684	DUF3799	0.92
PF03819	MazG	0.92
PF06378	DUF1071	0.92

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0202	DNA-directed RNA polymerase, alpha subunit/40 kD subunit	Transcription [K]	4.59
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	3.67
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	1.83

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.96 %
All Organisms	root	All Organisms	44.04 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.96 %
Viruses	superkingdom	All Organisms → Viruses	39.45 %
cellular organisms	root	All Organisms → cellular organisms	4.59 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	38.53 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.75 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	1.83 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	38.53 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.75 %
unclassified Archaea	no rank	All Organisms → cellular organisms → Archaea → unclassified Archaea	1.83 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	38.53 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.75 %
archaeon	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	1.83 %

Associated Scaffolds

Scaffold	Taxonomy	Length
2046860005|LWAeNNiAF_GBUVFP102HWFL2	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	532
3300002299|B570J29632_100241	All Organisms → Viruses → Predicted Viral	3200
3300003404|JGI25920J50251_10065441	Not Available	910
3300003429|JGI25914J50564_10010915	All Organisms → cellular organisms → Bacteria	2870
3300004112|Ga0065166_10011437	All Organisms → Viruses → Predicted Viral	2409
3300005517|Ga0070374_10243566	Not Available	920
3300005517|Ga0070374_10314850	Not Available	793
3300005517|Ga0070374_10322709	Not Available	782
3300005517|Ga0070374_10600277	Not Available	546
3300005527|Ga0068876_10558112	Not Available	624
3300005528|Ga0068872_10170970	All Organisms → Viruses → Predicted Viral	1255
3300005805|Ga0079957_1148934	All Organisms → Viruses → Predicted Viral	1193
3300007538|Ga0099851_1001459	Not Available	9997
3300007538|Ga0099851_1173536	Not Available	795
3300007542|Ga0099846_1010353	All Organisms → Viruses → Predicted Viral	3695
3300007542|Ga0099846_1061209	All Organisms → Viruses → Predicted Viral	1417
3300007708|Ga0102859_1018327	Not Available	1806
3300008107|Ga0114340_1003631	Not Available	11570
3300008107|Ga0114340_1159186	Not Available	820
3300008107|Ga0114340_1265830	Not Available	513
3300008110|Ga0114343_1104874	Not Available	972
3300008111|Ga0114344_1226909	Not Available	564
3300008113|Ga0114346_1094910	All Organisms → Viruses → Predicted Viral	1379
3300008113|Ga0114346_1319983	Not Available	522
3300008113|Ga0114346_1320023	Not Available	522
3300008114|Ga0114347_1000563	Not Available	62121
3300008117|Ga0114351_1022840	All Organisms → Viruses → Predicted Viral	4171
3300008117|Ga0114351_1323519	Not Available	712
3300008261|Ga0114336_1001087	Not Available	44923
3300008266|Ga0114363_1093916	All Organisms → Viruses → Predicted Viral	1091
3300008266|Ga0114363_1247150	Not Available	504
3300008267|Ga0114364_1021569	All Organisms → Viruses → Predicted Viral	2664
3300008448|Ga0114876_1079065	All Organisms → Viruses → Predicted Viral	1372
3300008448|Ga0114876_1200791	Not Available	673
3300009081|Ga0105098_10222950	Not Available	879
3300009165|Ga0105102_10099107	All Organisms → Viruses → Predicted Viral	1366
3300010354|Ga0129333_10058767	All Organisms → Viruses → Predicted Viral	3588
3300012665|Ga0157210_1000048	Not Available	64745
3300017707|Ga0181363_1072355	Not Available	596
3300017716|Ga0181350_1039990	All Organisms → Viruses → Predicted Viral	1270
3300017723|Ga0181362_1011816	Not Available	1877
3300017736|Ga0181365_1051033	Not Available	1033
3300017754|Ga0181344_1001308	All Organisms → Viruses	9210
3300017754|Ga0181344_1004040	Not Available	5043
3300017754|Ga0181344_1216099	Not Available	535
3300017761|Ga0181356_1134815	Not Available	776
3300017761|Ga0181356_1243548	Not Available	515
3300017784|Ga0181348_1149684	Not Available	875
3300017785|Ga0181355_1077063	All Organisms → Viruses → Predicted Viral	1396
3300017785|Ga0181355_1332596	Not Available	562
3300017785|Ga0181355_1382171	Not Available	512
3300017785|Ga0181355_1385091	Not Available	510
3300017785|Ga0181355_1394832	Not Available	501
3300019784|Ga0181359_1019878	All Organisms → Viruses → Predicted Viral	2533
3300019784|Ga0181359_1071978	All Organisms → Viruses → Predicted Viral	1308
3300019784|Ga0181359_1084742	Not Available	1182
3300020048|Ga0207193_1279568	All Organisms → Viruses → Predicted Viral	1224
3300020496|Ga0208230_1000022	Not Available	27222
3300022190|Ga0181354_1169777	Not Available	670
3300022190|Ga0181354_1173952	Not Available	659
3300022200|Ga0196901_1010138	All Organisms → Viruses → Predicted Viral	4006
3300022200|Ga0196901_1027322	All Organisms → Viruses → Predicted Viral	2246
3300022407|Ga0181351_1026721	All Organisms → Viruses → Predicted Viral	2452
3300022407|Ga0181351_1035299	All Organisms → Viruses → Predicted Viral	2121
3300022407|Ga0181351_1051998	All Organisms → Viruses → Predicted Viral	1708
3300022407|Ga0181351_1179221	Not Available	731
3300022407|Ga0181351_1228070	Not Available	598
3300022407|Ga0181351_1235871	Not Available	581
3300024348|Ga0244776_10170061	Not Available	1573
3300024496|Ga0255151_1020298	All Organisms → Viruses → Predicted Viral	1165
3300024505|Ga0255150_1001496	All Organisms → Viruses → Predicted Viral	4920
3300027644|Ga0209356_1058932	All Organisms → Viruses → Predicted Viral	1181
3300027656|Ga0209357_1098525	All Organisms → cellular organisms → Bacteria	830
3300027679|Ga0209769_1069737	All Organisms → Viruses → Predicted Viral	1161
3300027693|Ga0209704_1226516	Not Available	546
3300027785|Ga0209246_10118712	All Organisms → cellular organisms → Bacteria	1038
3300027793|Ga0209972_10194202	Not Available	944
3300027798|Ga0209353_10312490	Not Available	663
3300027892|Ga0209550_10226316	All Organisms → Viruses → Predicted Viral	1254
3300031758|Ga0315907_10028364	Not Available	5084
3300031758|Ga0315907_10038371	Not Available	4274
3300031758|Ga0315907_11033288	Not Available	590
3300031784|Ga0315899_10030053	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	5734
3300031784|Ga0315899_10626000	All Organisms → Viruses → Predicted Viral	1012
3300031787|Ga0315900_10132376	All Organisms → Viruses → Predicted Viral	2347
3300031787|Ga0315900_10174446	All Organisms → Viruses → Predicted Viral	1947
3300031857|Ga0315909_10005306	Not Available	14877
3300031857|Ga0315909_10030314	Not Available	5260
3300031857|Ga0315909_10083780	All Organisms → Viruses → Predicted Viral	2804
3300031857|Ga0315909_10312499	All Organisms → Viruses → Predicted Viral	1168
3300031857|Ga0315909_10389902	All Organisms → Viruses → Predicted Viral	1002
3300031951|Ga0315904_10007453	Not Available	14704
3300031951|Ga0315904_10439430	All Organisms → Viruses → Predicted Viral	1170
3300031951|Ga0315904_11302941	Not Available	549
3300031951|Ga0315904_11401725	Not Available	521
3300031963|Ga0315901_10394622	All Organisms → Viruses → Predicted Viral	1111
3300032050|Ga0315906_10082315	Not Available	3243
3300032050|Ga0315906_11335701	Not Available	508
3300032092|Ga0315905_10006028	Not Available	12329
3300032092|Ga0315905_10626845	Not Available	967
3300032092|Ga0315905_11045399	Not Available	682
3300032093|Ga0315902_10147611	All Organisms → Viruses → Predicted Viral	2452
3300032093|Ga0315902_10184699	All Organisms → Viruses → Predicted Viral	2118
3300032093|Ga0315902_10271576	All Organisms → Viruses → Predicted Viral	1630
3300032116|Ga0315903_10173150	All Organisms → Viruses → Predicted Viral	1952
3300034066|Ga0335019_0000064	Not Available	60549
3300034101|Ga0335027_0615116	Not Available	659
3300034103|Ga0335030_0327096	All Organisms → Viruses → Predicted Viral	1018
3300034280|Ga0334997_0044776	All Organisms → Viruses → Predicted Viral	3036

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	91.74%
Marine	Environmental → Aquatic → Marine	8.26%

Type

Habitat	Taxonomy	Distribution
Lentic	Environmental → Aquatic → Freshwater → Lentic	41.28%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	23.85%
Lake	Environmental → Aquatic → Freshwater → Lake	21.10%
Coastal	Environmental → Aquatic → Marine → Coastal	6.42%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.75%
River	Environmental → Aquatic → Freshwater → River	1.83%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.83%
Lotic	Environmental → Aquatic → Freshwater → Lotic	0.92%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	40.37%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	23.85%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	20.18%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	6.42%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.75%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	1.83%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	1.83%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.92%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.92%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	0.92%

Habitat

Habitat	Taxonomy	Distribution
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	38.53%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	23.85%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	13.76%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	5.50%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	3.67%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	2.75%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	1.83%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	1.83%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	1.83%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	1.83%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Sediment	0.92%
Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake	0.92%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment	0.92%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	0.92%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.92%

Associated Samples

Taxon OID	Sample Name	Habitat Type
2046860005	Sediment microbial communities from Lake Washington, Seattle, for Methane and Nitrogen Cycles, sample from SIP 13C-methane aerobic no nitrate additional fraction	Environmental
3300002299	Freshwater microbial communities from Lake Mendota, WI - 01NOV2011 deep hole epilimnion	Environmental
3300003404	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD	Environmental
3300003429	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN	Environmental
3300004112	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 2)	Environmental
3300005517	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 4)	Environmental
3300005527	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG	Environmental
3300005528	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG	Environmental
3300005805	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA	Environmental
3300007538	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG	Environmental
3300007542	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG	Environmental
3300007708	Estuarine microbial communities from the Columbia River estuary - metaG 1371B-02	Environmental
3300008107	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA	Environmental
3300008110	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NA	Environmental
3300008111	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-C-NA	Environmental
3300008113	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA	Environmental
3300008114	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA	Environmental
3300008117	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NA	Environmental
3300008261	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA	Environmental
3300008266	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA	Environmental
3300008267	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR	Environmental
3300008448	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs	Environmental
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental
3300009165	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015	Environmental
3300010354	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA	Environmental
3300012665	Freshwater microbial communities from Talbot River, Ontario, Canada - S11	Environmental
3300017707	Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MLB.S.N	Environmental
3300017716	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.DCM.D	Environmental
3300017723	Freshwater viral communities from Lake Michigan, USA - Su13.ND.MM110.S.N	Environmental
3300017736	Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.N	Environmental
3300017754	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D	Environmental
3300017761	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.N	Environmental
3300017784	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.N	Environmental
3300017785	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N	Environmental
3300019784	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D	Environmental
3300020048	Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915	Environmental
3300020496	Freshwater microbial communities from Lake Mendota, WI - 01NOV2011 deep hole epilimnion (SPAdes)	Environmental
3300022190	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.N	Environmental
3300022200	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)	Environmental
3300022407	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D	Environmental
3300024348	0.2um to 3um size fraction coassembly	Environmental
3300024496	Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepB_8h	Environmental
3300024505	Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepA_8h	Environmental
3300027644	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SN (SPAdes)	Environmental
3300027656	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SD (SPAdes)	Environmental
3300027679	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.DN (SPAdes)	Environmental
3300027693	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015 (SPAdes)	Environmental
3300027785	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN (SPAdes)	Environmental
3300027793	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)	Environmental
3300027798	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD (SPAdes)	Environmental
3300027892	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (SPAdes)	Environmental
3300031758	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123	Environmental
3300031784	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112	Environmental
3300031787	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114	Environmental
3300031857	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125	Environmental
3300031951	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120	Environmental
3300031963	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116	Environmental
3300032050	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122	Environmental
3300032092	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121	Environmental
3300032093	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117	Environmental
3300032116	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119	Environmental
3300034066	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087	Environmental
3300034101	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107	Environmental
3300034103	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119	Environmental
3300034280	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME10Aug2009-rr0048	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
LWAeNNiAF_1184670	2046860005	Freshwater Sediment	MKALLIALLLWGFNDKVVIEKAGDVEGRKTYHVKVGKKTYEYMYAEEIAHALTTGDWVYNEDLKLNK
B570J29632_1002419	3300002299	Freshwater	MKALLIALLLWVCNDNVVIEKAGDVEGRKTYHVKVGDKTYEYMYAEEISHAMKTGVWVYNEDLK*
JGI25920J50251_100654411	3300003404	Freshwater Lake	MKTLLIALCIWGCTDKIKIQNAGDVEGRKTYHVKVGKITYEYMYAEEIANG
JGI25914J50564_100109157	3300003429	Freshwater Lake	MKTLLIALCIWGCTDKIKIQNAGDVEGRKTYHVKVGKITYEYMYAEEIANGLKTGDWLYNEDLKINK*
Ga0065166_100114373	3300004112	Freshwater Lake	MKALLIALCLWGCDDKIKIEKAGDVEGRKTYHVKVGRKTYEYMYAEEIAHALKTGDWVYNEDLKLNK*
Ga0070374_102435661	3300005517	Freshwater Lake	MKTLLIALCIWGCTDKIKIQNAGDVEGRKTYHVKVGKITYEYMYAEEI
Ga0070374_103148501	3300005517	Freshwater Lake	MKTLLLALCLWGCEDKIKIQNAGDVEGRKTYHVKVGKVTYEYMYAEEIANGLKTGDWLYNEDLK
Ga0070374_103227091	3300005517	Freshwater Lake	MKTLLLALCIWGCEDKIKIQNAGDVEGRKTYHVKVGKITYEYMYAEEIANGLKT
Ga0070374_106002771	3300005517	Freshwater Lake	MKTLLIALCLWGCEDKIKIQTAGDVEGRKTYHVKVGKITYEYMYAEEIANGLKTGDWLYNEDLKLNK*
Ga0068876_105581121	3300005527	Freshwater Lake	MKALLIARCLWGCDDKIKIEKAGDVEGRKTYHVKVGNVTYEYMYAEEIANGLKTGDWLYNEDLKIESK*
Ga0068872_101709705	3300005528	Freshwater Lake	CLWGCDDKIKIEKAGDVEGRKTYHVKVGRKTYEYMYAEEIANALTTGDWVYNEDLKIESK
Ga0079957_11489344	3300005805	Lake	MKALLLALCLWVCNDKVIIEKAGDVEGRKTYHVKVGKKTYEYMYAEEIAHALTTGVWVYNEDLKTK*
Ga0099851_100145921	3300007538	Aqueous	SDKKVVIQKADKVEGRQTYHVKVGENTYEYMYLEEISHSVKTGVWEYNEYLTINKKTK*
Ga0099851_11735364	3300007538	Aqueous	SDKKVVIQKADKVEGRQTYHVKVGENTYEYMYLEEISHSVKTGVWEYNEYLTFKK*
Ga0099846_101035313	3300007542	Aqueous	MKILILTLLLWGSDKKVVIQKADKVEGRQTYHVKVGEKTYEYMYLEEISHSVKTGVWEYNEYLTFKK*
Ga0099846_10612091	3300007542	Aqueous	MKILILTLLLWGSDKKVVIQKADKVEGRQTYHVKVGENTYEYMYLEEISHSVKTGVWEYNEYLTINKKTK*
Ga0102859_10183273	3300007708	Estuarine	MKTLLIALCLWGCEDKIKIQNAGDVEGRKTYHVKVGKVTYEYMYAEEIANGLKTGDWLYNEDLKLNK*
Ga0114340_100363122	3300008107	Freshwater, Plankton	MQIILFILLLWGSEKKVIIQEADKVEGRQTYHVKVGKKTYEYMYAEEIANSLKTGVWEYNEDLK*
Ga0114340_11591862	3300008107	Freshwater, Plankton	MQIILFILLLWGCDQKKVVIQNAGDVEGRKTYHDKVGKVTYEYMYAEEIANSLKTGVWEYNEDLK*
Ga0114340_12658301	3300008107	Freshwater, Plankton	MKTLLIALLLWGCNDNVVIENAGDVEGRKTYHVKVGDKTYEYMYAEEISHGLTTGVWVYNEDLK*
Ga0114343_11048744	3300008110	Freshwater, Plankton	MQIILFILLLWGCDQKKVVIQNAGDVEGRKTYHVKVGKVTYEYMYAEEIANSLKTGVWEYNEDLK*
Ga0114344_12269091	3300008111	Freshwater, Plankton	MKTLLIALLLWGCNDNVVIEKADDVEGRKTYHVKVGEKTYEYMYAEEISHGLTTG
Ga0114346_10949101	3300008113	Freshwater, Plankton	KMKTLLIALLLWGCNDKVVIENAGDVEGRKTYHVKVGDKTYEYMYAEEIANALKTGDWVYNEDLKLNK*
Ga0114346_13199832	3300008113	Freshwater, Plankton	MKTLLIALLLWGCNDNVVIEKADDVEGRKTYHVKVGEKTYEYMYAEEISHGLTTGVWVYNEDLK*
Ga0114346_13200231	3300008113	Freshwater, Plankton	MKALLIALLLWVCNDNVVIEKAGDVEGRKTYHVKVGDKTYEYMYAEEISHGLTTGVWVYNEDLK*
Ga0114347_100056351	3300008114	Freshwater, Plankton	MQMKALLIFLCLCGCNQKKVVIQNAGDVEGRKTYHVKVGNVTYEYMYAEEIANGLKTGDWLYNEDLK*
Ga0114351_10228401	3300008117	Freshwater, Plankton	MKALLIFLCLCGCGQKKVVIQNAGDVEGRKTYHVKVGNVTYEYMYAEEIANGLKTGDWLYNEDLKIESK*
Ga0114351_13235193	3300008117	Freshwater, Plankton	MKALLIFLCLCGCDQKKVVIQNAGDVEGRKTYHVKVGRKTYEYMYAEEIANALTTGDWVYNEDLKIESK*
Ga0114336_100108730	3300008261	Freshwater, Plankton	MKTLLIALLLWGCNDKVVIENAGDVEGRKTYHVKVGDKTYEYMYAEEIAHALTTGDWVYNEDLKLNK*
Ga0114363_10939164	3300008266	Freshwater, Plankton	MKALLIALLLWGCNDNVVIENAGDVEGRKTYHVKVGEKTYEYMYAEEISHGLTTGVWVYNEDLK*
Ga0114363_12471502	3300008266	Freshwater, Plankton	MKALLIALCLWGCDDKIKIEKAGDVEGRKTYHVKVGRKTYEYMYAEEIANALTTGDWVYNEDLKLNK*
Ga0114364_10215693	3300008267	Freshwater, Plankton	MKALLIALLLWVCNDNVVIENAGDVEGRKTYHVKVGDNTYEYMYAEEISHGLTTGVWVYNEDLK*
Ga0114876_10790654	3300008448	Freshwater Lake	MQIILLILLLWGSEKKVIIQEADKVEGRQTYHVKVGKKTYEYMYAEEIANSLKTGVWEYNEDLK*
Ga0114876_12007913	3300008448	Freshwater Lake	MQIILFILLLWGSEKKIIIQEADKVEGRQTYHVKVGKVTYEYMYAEEIANSLKTGVWEYNEDLK*
Ga0105098_102229502	3300009081	Freshwater Sediment	MKALLIALCLWGCDDKIKIENAGDVDGRKTYHVKVGKHTYEYMYAEEIANALKTGDWVYNEDLK*
Ga0105102_100991072	3300009165	Freshwater Sediment	MKALLIALCLWGCDDKIKIENAGEVDGRKTYHVKVGKQTYEYMYAEEIANALKTGDWVYNEDLK*
Ga0129333_100587674	3300010354	Freshwater To Marine Saline Gradient	MKALLIALLLWVCNDKVVIENAGDVEGRKTYHVKVGDKTYEYMYAEEISHGLTTGVWVYNEDLKLNK*
Ga0157210_100004824	3300012665	Freshwater	MKALLISLLLWGCNDKVVIEKAGDVEGRKTYHVKVGNKIYEYMYAEEIAHALTTGVWVYNEDLKTK*
Ga0181363_10723553	3300017707	Freshwater Lake	MQIILLILLLWGSEKKLIIQEADKVEGRQTYHVKVGKKTYEYMYAEEIANSLKTGVWEYNEDLKXMN
Ga0181350_10399905	3300017716	Freshwater Lake	WGCNDKIKIQNAGDVEGRKTYHVKVGKITYEYMYAEEIANGLKTGDWLYNEDLKLNK
Ga0181362_10118166	3300017723	Freshwater Lake	MKTLLIALCLWGCEDKIKIQTAGDVEGRKTYHVKVGKITYEYMYAEEIANGLKTGD
Ga0181365_10510333	3300017736	Freshwater Lake	MKTLLLALCIWGCTDKIKIQNAGDVEGRKTYHVKVGKITYEYMYAEEIANGLKTGDWLYNEDLKINK
Ga0181344_100130813	3300017754	Freshwater Lake	MKTLLIALCLWGCDDKIKIENAGDVDGRKTYHVKVGKHTYEYMYAEEISNALKTGDWVYNEDLK
Ga0181344_10040408	3300017754	Freshwater Lake	MKALLIALCLWGCDDKIKIEKAGDVEGRKTYHVKVGRKTYEYMYAEEIAHALKTGDWVYNEDLKLNK
Ga0181344_12160991	3300017754	Freshwater Lake	PCKRTNKMKTLLIALCIWGCTDKIKIQNAGDVEGRKTYHVKVGKITYEYMYAEEIANGLKTGDWLYNEDLKINK
Ga0181356_11348151	3300017761	Freshwater Lake	MKTLLIALCLWGCTDKIKIQNAGDVEGRKTYHVKVGKITYEYMYAEEIANG
Ga0181356_12435481	3300017761	Freshwater Lake	GCTDKIKIQNAGDVEGRKTYHVKVGKITYEYMYAEEIANGLKTGDWLYNEDLKLNK
Ga0181348_11496841	3300017784	Freshwater Lake	MKTLLLALCIWGCNDKIKIQNAGDVEGRKTYHVKVGKITYEYMYAEEIANGLKTGDWLYNEDLKLETK
Ga0181355_10770635	3300017785	Freshwater Lake	RGGGLLLALGIWGCNDKIKIQNAGDVEGRKTYHVKVGKITYEYMYAEEIANGLKTGDWLYNEDLKLNK
Ga0181355_13325963	3300017785	Freshwater Lake	MKTLLIALCIWGCTDKIKIQNAGDVEGRKTYHVKVGKITYEYMYAE
Ga0181355_13821712	3300017785	Freshwater Lake	MKTLLLALCIWGCEDKIKIQNAGDVEGRKTYHVKVGKITYEYMYAE
Ga0181355_13850911	3300017785	Freshwater Lake	MKALLIALCLWGCDDKIKIEKAGDVDGRKTYHVKVGKQTYEYMYAEEIANALKT
Ga0181355_13948322	3300017785	Freshwater Lake	MKTLLLALCIWGCTDKIKIQNAGDVEGRKTYHVKVGKITYEYMYAE
Ga0181359_10198784	3300019784	Freshwater Lake	MKTLLIALCIWGCTDKIKIQNAGDVEGRKTYHVKVGKITYEYMYAEEIANGLKTGDWLYNEDLKINK
Ga0181359_10719785	3300019784	Freshwater Lake	LRKLYFNQLKTMKTLLLALCIWGCNDKIKIQNAGDVEGRKTYHVKVGKITYEYMYAEEIANGLKTGDWLYNEDLKLNK
Ga0181359_10847425	3300019784	Freshwater Lake	MKTLLIALCLWGCEDKIKIQTAGDVEGRKTYHVKVGKITYEYMYAEEIANGLKTGDWLYNEDLKINK
Ga0207193_12795683	3300020048	Freshwater Lake Sediment	CPPQDRTTNFRKMKALLIALLLWGCNDKVVIENAGDVEGRNTYHVKVGDKTYEYMYAEEISHGLTTGVWVYNEDLKLNK
Ga0208230_100002235	3300020496	Freshwater	MKALLIALLLWVCNDNVVIEKAGDVEGRKTYHVKVGDKTYEYMYAEEISHAMKTGVWVYNEDLK
Ga0181354_11697772	3300022190	Freshwater Lake	MKTLLIALCLWGCEDKIKIQNAGDVEGRKTYHVKVGKITYEYMYAEEIANGLKTGDWLYNEDLKLNK
Ga0181354_11739523	3300022190	Freshwater Lake	MKTLLLALCIWGCTDKIKIQNAGDVEGRKTYHVKVGKITYEYMYAEEIANGLKTGDWLYNEDLKLNK
Ga0196901_101013810	3300022200	Aqueous	MKILILTLLLWGSDKKVVIQKADKVEGRQTYHVKVGEKTYEYMYLEEISHSVKTGVWEYNEYLTFKK
Ga0196901_10273225	3300022200	Aqueous	MKILILTLLLWGSDKKVVIQKADKVEGRQTYHVKVGENTYEYMYLEEISHSVKTGVWEYNEYLTINKKTK
Ga0181351_10267212	3300022407	Freshwater Lake	MKALLIALLLWVCNDNVVIEKAGDVEGRKTYHVKVGDKTYEYMYAEEISHGLTTGVWVYNEDLK
Ga0181351_10352991	3300022407	Freshwater Lake	MKALLIALLLWGCKDKVVIENAGDVEGRKTYHVKVGDKTYEYMYAEEIAHALTTGDWVYNEDLK
Ga0181351_10519982	3300022407	Freshwater Lake	MKTLLLALCIWGCEDKIKIQNAGDVEGRKTYHVKVGKITYEYMYAEEIANGLKTGDWLYNEDLKLNK
Ga0181351_11792213	3300022407	Freshwater Lake	MKTLLLALCIWGCEDKIKIQNAGDVEGRKTYHVKVGKITYEYMYA
Ga0181351_12280701	3300022407	Freshwater Lake	MKTLLIALCLWGCEDKIKIQNAGDVEGRKTYHVKVGKITYEYMYAE
Ga0181351_12358711	3300022407	Freshwater Lake	MKTLLIALCLWGCTDKIKIQNAGDVEGRKTYHVKVGKITYEYMYAEEIANGLKTGDWLYNEDLKLNK
Ga0244776_101700613	3300024348	Estuarine	MKTLLIALCLWGCEDKIKIQNAGDVEGRKTYHVKVGKVTYEYMYAEEIANGLKTGDWLYNEDLKLNK
Ga0255151_10202982	3300024496	Freshwater	MKALLIFLCLCGCDQKRVVIQNAGDVEGRKTYHVRVGNVTYEYMYAEEIANGLKTGDWLYNEDLKIESK
Ga0255150_100149613	3300024505	Freshwater	MKALLIFLCLCGCNQKKVVIQNAGDVEGRKTYHVKVGNVTYEYMYAEEIANGLKTGDWLYNEDLKIESK
Ga0209356_10589323	3300027644	Freshwater Lake	MKTLLIALCIWGCTDKIKIQNAGDVEGRKTYHVKVGKITYEYMYAEEIANGLKTGDWLYNEDLKLNK
Ga0209357_10985253	3300027656	Freshwater Lake	ALCIWGCTDKIKIQNAGDVEGRKTYHVKVGKITYEYMYAEEIANGLKTGDWLYNEDLKIN
Ga0209769_10697374	3300027679	Freshwater Lake	CIWGCNDKIKIQNAGDVEGRKTYHVKVGKITYEYMYAEEIANGLKTGDWLYNEDLKLNK
Ga0209704_12265162	3300027693	Freshwater Sediment	LCLWGCNDKVVIQNAGDVEGRKTYHVKVGKVTYEYMYAEEIANALKTGDWVYNEDLK
Ga0209246_101187122	3300027785	Freshwater Lake	MKTLLIALCLWGCEDKIKIQTAGDVEGRKTYHVKVGKITYEYMYAEEIANGLKTGDWLYNEDLKLNK
Ga0209972_101942025	3300027793	Freshwater Lake	MKALLIARCLWGCDDKIKIEKAGDVEGRKTYHVKVGNVTYEYMYAEE
Ga0209353_103124901	3300027798	Freshwater Lake	MKTLLIALCLWGCTDKIKIQNAGDVEGRKTYHVKVGKITYEYMYAEEIANGLKTG
Ga0209550_102263165	3300027892	Freshwater Lake	CEDKIKIQNAGDVEGRKTYHVKVGKITYEYMYAEEIANGLKTGDWLYNEDLKLNK
Ga0315907_1002836415	3300031758	Freshwater	MQMKALLIFLCLCGCNQKKVVIQNAGDVEGRKTYHVKVGNVTYEYMYAEEIANGLKTGDWLYNEDLK
Ga0315907_100383718	3300031758	Freshwater	MKALLIARCLWGCDDKIKIEKAGDVEGRKTYHVKVGNVTYEYMYAEEIANGLKTGDWLYNEDLKIESK
Ga0315907_110332881	3300031758	Freshwater	MQIILFILLLWGCDQKKVVIQNAGDVEGRKTYHVKVGKVTYEYMYAEEIANSLKTGVWEYNEDLK
Ga0315899_100300537	3300031784	Freshwater	MKTLLIALLLWGCNDNVVIEKADDVEGRKTYHVKVGEKTYEYMYAEEISHGLTTGVWVYNEDLK
Ga0315899_106260003	3300031784	Freshwater	DRTSNFRKMKTLLIALLLWGCNDKVVIENAGDVEGRKTYHVKVGDKTYEYMYAEEIANALKTGDWVYNEDLKLNK
Ga0315900_101323767	3300031787	Freshwater	MKTLLIALLLWGCNDKVVIEKSGDVEGRKTYHVKVGDKTYEYMYAEEISHGLTTGVWVYNEDLKLNK
Ga0315900_101744461	3300031787	Freshwater	MQMKALLIFLCLCGCDQKKVVIQNAGDVEGRKTYHVKVGNVTYEYMYAEEIANGLKTGDWLYNE
Ga0315909_1000530613	3300031857	Freshwater	MKALLIFLCLCGCNQKKVVIQNAGDVEGRKTYHVKVGNVTYEYMYAEEIANGLKTGDWLYNEDLK
Ga0315909_1003031416	3300031857	Freshwater	MKALLIFLCLCGCGQKKVVIQNAGDVEGRKTYHVKVGNVTYEYMYAEEIANGLKTGDWLYNEDLKIESK
Ga0315909_100837806	3300031857	Freshwater	MKALLIALLLWGCNDNVVIENAGDVEGRKTYHVKVGEKTYEYMYAEEISHGLTTGVWVYNEDLK
Ga0315909_103124994	3300031857	Freshwater	MQIILLILLLWGSEKKVIIQEADKVEGRQTYHVKVGKKTYEYMYAEEIANSLKTGVWEYNEDLK
Ga0315909_103899025	3300031857	Freshwater	MKALLISLCLWGCDDKIKIEKAGDVEGRKTYHVKVGNVTYEYMYAEEIA
Ga0315904_1000745323	3300031951	Freshwater	MQIILFILLLWGSEKKVIIQEADKVEGRQTYHVKVGKKTYEYMYAEEIANSLKTGVWEYNEDLK
Ga0315904_104394301	3300031951	Freshwater	WGCDDKIKIEKAGDVEGRKTYHVKVGRKTYEYMYAEEIANALTTGDWVYNEDLKLNK
Ga0315904_113029413	3300031951	Freshwater	MKALLIALLLWVCNDNVVIENAGDVEGRKTYHVKVGDNTYEYMYAEEISHGLTTGVWVYNEDL
Ga0315904_114017253	3300031951	Freshwater	MKTLLIALLLWGCNDNVVIEKADDVEGRKTYHVKVGEKTYEYMYAEEISHGLT
Ga0315901_103946221	3300031963	Freshwater	MQMKALLIFLCLCGCDQKKVVIQNAGDVEGRKTYHVKVGNVTYEYMYAEEIANGLKTGDWLYNEDL
Ga0315906_100823158	3300032050	Freshwater	MKALLIALCLWGCDDKIKIEKAGDVEGRKTYHVKVGNVTYEYMYAEEIA
Ga0315906_113357013	3300032050	Freshwater	LLIARCLWGCDDKIKIEKAGDVEGRKTYHVKVGNVTYEYMYAEEIANGLKTGDWLYNEDLKIESK
Ga0315905_1000602819	3300032092	Freshwater	MKTLLIALLLWGCNDKVVIENAGDVEGRKTYHVKVGDKTYEYMYAEEIAHALTTGDWVYNEDLK
Ga0315905_106268453	3300032092	Freshwater	MKTLLIALLLWGCNDKVVIENAGDVEGRKTYHVKVGDKTYEYMYAEEIANALKTGDWVYNEDLKLNK
Ga0315905_110453992	3300032092	Freshwater	MKALLIALLLWVCNDNVVIENAGDVEGRKTYHVKVGDNTYEYMYAEEISHGLTTGVWVYNEDLK
Ga0315902_101476111	3300032093	Freshwater	RYQQCPPQDRTSNFRKMKALLIALLLWGCNDNVVIENAGDVEGRKTYHVKVGEKTYEYMYAEEISHGLTTGVWVYNEDLK
Ga0315902_101846996	3300032093	Freshwater	MKTLLIALLLWGCNDKVVIENAGDVEGRKTYHVKVGDKTYEYMYAEEIAHALTTGDWVYNEDLKLNK
Ga0315902_102715766	3300032093	Freshwater	MKALLIALCLWGCDDKIKIEKAGDVEGRKTYHVKVGRKTYEYMYAEEIANALTTGDWVYNEDLKLNK
Ga0315903_101731505	3300032116	Freshwater	MKTLLIALLLWGCNDNVVIENAGDVEGRKTYHVKVGDKTYEYMYAEEISHGLTTGVWVYNEDLK
Ga0335019_0000064_52397_52603	3300034066	Freshwater	MKALLIFLCLFGCDQKKVVIQNAGEVEGRKTYHVKVGKVTYEYMYAEEIANGLKTGDWLYNEDLKINK
Ga0335027_0615116_21_224	3300034101	Freshwater	MKALLIALLLWGCNDKVVIEKAGDVEGRKTYHVKVGKKTYEYMYAEEIAHALTTGDWVYNEDLKLNK
Ga0335030_0327096_2_184	3300034103	Freshwater	LIALLLWVCNDNVVIEKAGDVEGRKTYHVKVGDKTYEYMYAEEISHAMKTGVWVYNEDLK
Ga0334997_0044776_1944_2138	3300034280	Freshwater	MKALLIALLLWVCNDNVVIEKAGDVEGRKTYHVKVGDNTYEYMYAEEISHGLTTGVWVYNEDLK