NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315905_10004791

Scaffold Ga0315905_10004791


Overview

Basic Information
Taxon OID3300032092 Open in IMG/M
Scaffold IDGa0315905_10004791 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13840
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (78.26%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.8268Long. (o)-83.1913Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009516Metagenome316Y
F014495Metagenome / Metatranscriptome262Y
F093500Metagenome106N
F100671Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0315905_100047912F093500AGGAGMLSDEETDNFENYDKRVEATLAFRLLEYLAFRGVITDNDVSNLRYPPCELIIDAEEAFDE
Ga0315905_100047913F100671AGGAGMTNQIKYRLDPNTGRPLHLFGNLAIVLNDDGTTVIEHYDENGRLCKTSANLVPYPKDWKP
Ga0315905_100047914F009516N/AMARPMIYPMGTLEIGEVGTMPATEKGSVKRTSRNVSQYGVRNGKTFRCHTVNGVTFITRL
Ga0315905_100047916F014495N/AMKGEIMIRPQQAAPMGRKHRVSSDSTWPLRSSIDGKTFAERRAMREKEQSK

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