Scaffold Ga0315905_10001705

Overview

Basic Information

• Taxon OID: 3300032092
• Scaffold ID: Ga0315905_10001705
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23441
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (75.00%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005584	Metagenome	395	Y
F005702	Metagenome	392	Y
F005846	Metagenome	388	Y
F006138	Metagenome / Metatranscriptome	380	Y
F008741	Metagenome	328	Y
F010463	Metagenome	303	N
F025739	Metagenome / Metatranscriptome	200	Y
F033350	Metagenome	177	N
F041645	Metagenome	159	Y
F074559	Metagenome	119	N
F100669	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_100017051	F100669	AGGGGG	MTKGTHPKGICDLRKILHKAQVRLTQAGSLSIGYLRITRRNLLWLGHLGNFYFAKSLQNRFR
Ga0315905_1000170510	F010463	GGA	VSVNDLVLAATIHRVKCCEEKIAQFEQLISTLTAQMAHNRSELASKGLANLVMGTTTPLDIPRELRPTFGRYRARGNRSHNTVQKRWGIWKAQYESGLTVKEIAHAWGCHHSSIVNAKSKNFTARKSTGRGIK
Ga0315905_1000170513	F033350	AGGAGG	MSAVDVEVPETKWSMLVWKTLKEKPHNDERVLMDIGGEVVVGRFVDDSFVSRSWGHSENDVRLWANWPKAPKW
Ga0315905_1000170518	F005702	AGGA	VIIFLVVFFGLLILQGVRIFAKHIDQQNYERRKFYLFVAAELDKMDKIVAEGNQPKEQKEPELLLPTKNWVGRN
Ga0315905_1000170519	F005846	N/A	MTSLPLPARPVGSAVPALHDEFSLGFSIEGKLNGWRGWFDQETKQGYNRHGKFASNHNLMAERILGAGIKPRFVDCEIMGQRTKTGKGTIVVMDAFDPANPKPYADRMKEIEHLEAVTFDIPNNKLLRFVRLAHHKINAIWEEMNFQNNKAGEVIWEGFVMKALDDGKYPYITNPNYCSPAWQKQRIRW
Ga0315905_1000170523	F074559	AGG	MKAQNPWQKLLSEHIKDKFAPPPPAGYHTREEVSKLWGKSMNTTSRMLSQMLLEKKVDMRRHPFIIPRKDHRVVRNLKIYKILPTKHPHK
Ga0315905_1000170527	F025739	AGGAG	LFSGGLKIEPKPAGKGTMMKLLTIESSVIRRSILGFIVGSLICGCATTRPYDIGEVPNQDSITDYIMRWDKLDRTKATPEEYRQLFGQSLKTISRLVEENERLRKRLDQ
Ga0315905_1000170532	F041645	GGTGG	MASVIIGSAIGATSTSKALQRQNFNKEPNGLETIIEAYAIQTANRDAVVPEKNTLHSAFSSSTKKYSRMVVESVATEEQDGGITQMLVTYVGLTILTGLPPAIVRIIPAAGEGVYGPPVVIEAEYVTDVSETQFMAGQRAQNNATQFTFGFNSVIKMPPFINGTALPQDPRPAFFSSPSGGVGFIENYSGYCVLSKSCERRGLFLVARDTFHEVQQVATVGAQ
Ga0315905_1000170538	F006138	GAGG	MAAVTIGTQGLSFGLVAEAGIGLVQSFSEARNVEKNEVKNNLGDIVAIGYFNATTSYSLSVAITGSFNVTAGAALAALANATTLGTTRIDSITLNKSNDAFVTLDISATGYPNVT
Ga0315905_1000170545	F005584	AGGAGG	MAGTIDTSYFRTDLQFMIADMFQTVTGLGSSAVSASVTDLTTASELEIGGEVFRVTQSLVVLASAISAPTIGSLCSVSGVERMIGGFSQSTDGLSFTIELAEITT
Ga0315905_1000170546	F008741	GAG	MSVKTIKYSQRLGDVLRCLPAAKHLADQGHEVFFDCFAQYQGVFDLTSYVKAGHRQGDVIDLEVWPNQYEAYRKSRRSWTDFVYSHPEIKDADKTNIILDKLDDKPAEGLPESYNLVAPFGLSQGHYRNPLELIVRARQTMGKDNFFVLCPADIKIQGLSTYTAPSVEQMAKAIRGATDFWAINSTPIILASATRRDKQTGFFPQKDEWETDNIFSFEGMTTMD