NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318525_10456647

Scaffold Ga0318525_10456647


Overview

Basic Information
Taxon OID3300032089 Open in IMG/M
Scaffold IDGa0318525_10456647 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)654
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007659Metagenome / Metatranscriptome347Y
F085296Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0318525_104566471F007659N/AVVSIYRFAGGISPAMTPRASLPMLPKAAYEQACDLFDEIAAAAGLAVVKGGGRGEAELRRFELDADTEIETRDHGVMTVAELERLVRKQHPRDLRCSGTFHDPTRVRTDSHLINWGRHGLGIWDAMTETTWHRRERAPSARFEFLGQLMERSPFQ
Ga0318525_104566472F085296AGGAGMSAFDGEAISKADREFLDGLSNHPLMRHPLYSVPPPPRPNYSGCTTIAEKTAKQIACFPAALD

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