Scaffold Ga0315321_10257172

Overview

Basic Information

• Taxon OID: 3300032088
• Scaffold ID: Ga0315321_10257172
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 21515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1127
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037480	Metagenome	168	Y
F086310	Metagenome	111	Y
F106118	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315321_102571721	F086310	GGCGG	MQVGDLVRHFLTEQVGIVLTVVVAKPRRSIASIQVLWTTQGDSLFGPGRKEWCGEEN
Ga0315321_102571722	F037480	GGAGG	MQVGDLVHMPGSIEKITGIVLRTKPRGHLQADRVQVYWVEDAEASWESIKWLAVINASR
Ga0315321_102571725	F106118	AGGAG	MQVGDLVRCTTVDGKPVGLVVERFNPAHNPLDAMAFGSRPDIFYVLIPGYEDPFPIRTRQMELVNASR