Scaffold Ga0326721_10000042

Overview

Basic Information

• Taxon OID: 3300032080
• Scaffold ID: Ga0326721_10000042
• Source Dataset Name: Soil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 117350
• Total Scaffold Genes: 136
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 99 (72.79%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Marine Airborne Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 36.36
  • Long. (^o): -97.29

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016854	Metagenome / Metatranscriptome	244	Y
F031439	Metagenome / Metatranscriptome	182	Y
F081191	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326721_10000042101	F081191	N/A	VSRRSKLPPPEEIVAAIVELADDGFCRRNELVQRFPKLGARDQRRALRRAIAQGLVIERRGPDGGFHLAVSSEGWNLHRSG
Ga0326721_10000042103	F016854	GGGGG	MARSNVKSVPKPGEVWLSCPPYLMLARIVDVNLTAEPPVVSYELHDEDGSLLQAVEHATLDRGWWRTFQRLEPRFG
Ga0326721_10000042131	F031439	AGCAGG	MYFIPLALILFVALVAVAWSPIFALIIFVIGFVAFLAFAGMNRRADEKLAPPEQPGRQPQHENETPTGVWGERRPS