Scaffold Ga0315315_10071910

Overview

Basic Information

• Taxon OID: 3300032073
• Scaffold ID: Ga0315315_10071910
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3209
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020533	Metagenome / Metatranscriptome	223	N
F031662	Metagenome / Metatranscriptome	182	Y
F044429	Metagenome	154	N
F103900	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315315_100719101	F103900	N/A	NIKMSDHRNQIILESLYQKYIDLGYEDAEAQELAAKEFEENSN
Ga0315315_100719103	F044429	AGGAG	MSELPPIEDRMPGCEWVLVIKYGDPYTNIQQTTGFGPFPTKEDADNFRAQYYYDQIVIADIVPLNAVLPQSATELDIDFVPEGKVVDISSKINPNKH
Ga0315315_100719104	F031662	AGGAG	MDFKIEKNVPVRTFNSPFCEALDQLEVGDSIGNLTKKEVYRYRPNFYTPTFRDRKFTFKKENGTMYRIWRIS
Ga0315315_100719106	F020533	AGG	MQDAIMLDQDDLVAEFERKVRDKKIFFEVINPGQPESKGVDIAAMLEENNKLKSELRIFKDIVQASITADARRGFNG